miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1651 5' -61.6 NC_001347.2 + 125829 1.09 0.001322
Target:  5'- uGGGCCAGCUGCAUCGUGCCGGCGCGAc -3'
miRNA:   3'- -CCCGGUCGACGUAGCACGGCCGCGCU- -5'
1651 5' -61.6 NC_001347.2 + 82516 0.8 0.149841
Target:  5'- aGGCCAGC-GCAgCGUaGCUGGCGCGAu -3'
miRNA:   3'- cCCGGUCGaCGUaGCA-CGGCCGCGCU- -5'
1651 5' -61.6 NC_001347.2 + 31586 0.79 0.161026
Target:  5'- aGGCCAGCUGCGUCGUcaaggaCGGCGUGu -3'
miRNA:   3'- cCCGGUCGACGUAGCAcg----GCCGCGCu -5'
1651 5' -61.6 NC_001347.2 + 103715 0.75 0.28646
Target:  5'- cGGCU-GCUGCGUCGUGaCGGCGCc- -3'
miRNA:   3'- cCCGGuCGACGUAGCACgGCCGCGcu -5'
1651 5' -61.6 NC_001347.2 + 182276 0.74 0.340337
Target:  5'- aGGGUCAcGCUgaccaugcgGCGUCGuUGCCGGgGCGGc -3'
miRNA:   3'- -CCCGGU-CGA---------CGUAGC-ACGGCCgCGCU- -5'
1651 5' -61.6 NC_001347.2 + 152 0.73 0.369905
Target:  5'- -uGCCGGgUGUGUCGUGCCGGguguguCGCGGg -3'
miRNA:   3'- ccCGGUCgACGUAGCACGGCC------GCGCU- -5'
1651 5' -61.6 NC_001347.2 + 229631 0.73 0.369905
Target:  5'- -uGCCGGgUGUGUCGUGCCGGguguguCGCGGg -3'
miRNA:   3'- ccCGGUCgACGUAGCACGGCC------GCGCU- -5'
1651 5' -61.6 NC_001347.2 + 150912 0.72 0.425718
Target:  5'- uGGGUUucGCaGCggCGUGCCGuGCGCGAa -3'
miRNA:   3'- -CCCGGu-CGaCGuaGCACGGC-CGCGCU- -5'
1651 5' -61.6 NC_001347.2 + 31672 0.72 0.425718
Target:  5'- cGGGUCGGCUG-GUCGgGCCGuCGCGGa -3'
miRNA:   3'- -CCCGGUCGACgUAGCaCGGCcGCGCU- -5'
1651 5' -61.6 NC_001347.2 + 141797 0.71 0.459776
Target:  5'- aGGGCUugaAGaCcGCAggCGUGCCGGCGCc- -3'
miRNA:   3'- -CCCGG---UC-GaCGUa-GCACGGCCGCGcu -5'
1651 5' -61.6 NC_001347.2 + 2217 0.71 0.458907
Target:  5'- cGGGuCCGGCgGCGUCGgggaccgUGCCGcGCGCc- -3'
miRNA:   3'- -CCC-GGUCGaCGUAGC-------ACGGC-CGCGcu -5'
1651 5' -61.6 NC_001347.2 + 153234 0.71 0.47734
Target:  5'- aGGcGCgGGCgcGCGUCG-GCCGGCGaCGGc -3'
miRNA:   3'- -CC-CGgUCGa-CGUAGCaCGGCCGC-GCU- -5'
1651 5' -61.6 NC_001347.2 + 30609 0.7 0.504286
Target:  5'- cGGCCGGCcGCG--GUGCCGGCGg-- -3'
miRNA:   3'- cCCGGUCGaCGUagCACGGCCGCgcu -5'
1651 5' -61.6 NC_001347.2 + 165861 0.7 0.522611
Target:  5'- aGGCCGGCgGCAgggacaccgaugUCGaGCCGGCggGCGGg -3'
miRNA:   3'- cCCGGUCGaCGU------------AGCaCGGCCG--CGCU- -5'
1651 5' -61.6 NC_001347.2 + 153319 0.7 0.550557
Target:  5'- uGGCCAGCUcGCGUUG-GC-GGCGCu- -3'
miRNA:   3'- cCCGGUCGA-CGUAGCaCGgCCGCGcu -5'
1651 5' -61.6 NC_001347.2 + 184939 0.7 0.522611
Target:  5'- -aGCCGuCUGCAgcUCGUcgGCCGGCGUGGg -3'
miRNA:   3'- ccCGGUcGACGU--AGCA--CGGCCGCGCU- -5'
1651 5' -61.6 NC_001347.2 + 15593 0.7 0.531869
Target:  5'- cGGGCCcgcGGCUGCAU--UGCCuGGUGaCGAc -3'
miRNA:   3'- -CCCGG---UCGACGUAgcACGG-CCGC-GCU- -5'
1651 5' -61.6 NC_001347.2 + 89169 0.7 0.531869
Target:  5'- -aGCCuGCUGCGUgGUgaGCCGGUGCu- -3'
miRNA:   3'- ccCGGuCGACGUAgCA--CGGCCGCGcu -5'
1651 5' -61.6 NC_001347.2 + 1944 0.69 0.607634
Target:  5'- uGGCUgGGCUGCGcggCGggGCCGGCGaCGGg -3'
miRNA:   3'- cCCGG-UCGACGUa--GCa-CGGCCGC-GCU- -5'
1651 5' -61.6 NC_001347.2 + 2355 0.69 0.578945
Target:  5'- cGGGCguGCUGgG-CGcGCUGGCGCu- -3'
miRNA:   3'- -CCCGguCGACgUaGCaCGGCCGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.