Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1651 | 5' | -61.6 | NC_001347.2 | + | 125829 | 1.09 | 0.001322 |
Target: 5'- uGGGCCAGCUGCAUCGUGCCGGCGCGAc -3' miRNA: 3'- -CCCGGUCGACGUAGCACGGCCGCGCU- -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 82516 | 0.8 | 0.149841 |
Target: 5'- aGGCCAGC-GCAgCGUaGCUGGCGCGAu -3' miRNA: 3'- cCCGGUCGaCGUaGCA-CGGCCGCGCU- -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 31586 | 0.79 | 0.161026 |
Target: 5'- aGGCCAGCUGCGUCGUcaaggaCGGCGUGu -3' miRNA: 3'- cCCGGUCGACGUAGCAcg----GCCGCGCu -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 103715 | 0.75 | 0.28646 |
Target: 5'- cGGCU-GCUGCGUCGUGaCGGCGCc- -3' miRNA: 3'- cCCGGuCGACGUAGCACgGCCGCGcu -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 182276 | 0.74 | 0.340337 |
Target: 5'- aGGGUCAcGCUgaccaugcgGCGUCGuUGCCGGgGCGGc -3' miRNA: 3'- -CCCGGU-CGA---------CGUAGC-ACGGCCgCGCU- -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 152 | 0.73 | 0.369905 |
Target: 5'- -uGCCGGgUGUGUCGUGCCGGguguguCGCGGg -3' miRNA: 3'- ccCGGUCgACGUAGCACGGCC------GCGCU- -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 229631 | 0.73 | 0.369905 |
Target: 5'- -uGCCGGgUGUGUCGUGCCGGguguguCGCGGg -3' miRNA: 3'- ccCGGUCgACGUAGCACGGCC------GCGCU- -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 31672 | 0.72 | 0.425718 |
Target: 5'- cGGGUCGGCUG-GUCGgGCCGuCGCGGa -3' miRNA: 3'- -CCCGGUCGACgUAGCaCGGCcGCGCU- -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 150912 | 0.72 | 0.425718 |
Target: 5'- uGGGUUucGCaGCggCGUGCCGuGCGCGAa -3' miRNA: 3'- -CCCGGu-CGaCGuaGCACGGC-CGCGCU- -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 2217 | 0.71 | 0.458907 |
Target: 5'- cGGGuCCGGCgGCGUCGgggaccgUGCCGcGCGCc- -3' miRNA: 3'- -CCC-GGUCGaCGUAGC-------ACGGC-CGCGcu -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 141797 | 0.71 | 0.459776 |
Target: 5'- aGGGCUugaAGaCcGCAggCGUGCCGGCGCc- -3' miRNA: 3'- -CCCGG---UC-GaCGUa-GCACGGCCGCGcu -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 153234 | 0.71 | 0.47734 |
Target: 5'- aGGcGCgGGCgcGCGUCG-GCCGGCGaCGGc -3' miRNA: 3'- -CC-CGgUCGa-CGUAGCaCGGCCGC-GCU- -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 30609 | 0.7 | 0.504286 |
Target: 5'- cGGCCGGCcGCG--GUGCCGGCGg-- -3' miRNA: 3'- cCCGGUCGaCGUagCACGGCCGCgcu -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 165861 | 0.7 | 0.522611 |
Target: 5'- aGGCCGGCgGCAgggacaccgaugUCGaGCCGGCggGCGGg -3' miRNA: 3'- cCCGGUCGaCGU------------AGCaCGGCCG--CGCU- -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 184939 | 0.7 | 0.522611 |
Target: 5'- -aGCCGuCUGCAgcUCGUcgGCCGGCGUGGg -3' miRNA: 3'- ccCGGUcGACGU--AGCA--CGGCCGCGCU- -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 15593 | 0.7 | 0.531869 |
Target: 5'- cGGGCCcgcGGCUGCAU--UGCCuGGUGaCGAc -3' miRNA: 3'- -CCCGG---UCGACGUAgcACGG-CCGC-GCU- -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 89169 | 0.7 | 0.531869 |
Target: 5'- -aGCCuGCUGCGUgGUgaGCCGGUGCu- -3' miRNA: 3'- ccCGGuCGACGUAgCA--CGGCCGCGcu -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 153319 | 0.7 | 0.550557 |
Target: 5'- uGGCCAGCUcGCGUUG-GC-GGCGCu- -3' miRNA: 3'- cCCGGUCGA-CGUAGCaCGgCCGCGcu -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 191021 | 0.69 | 0.567546 |
Target: 5'- cGGGUagcGCUGCcucgucgucguccAUCGUGCCGcggaacuGCGCGAg -3' miRNA: 3'- -CCCGgu-CGACG-------------UAGCACGGC-------CGCGCU- -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 2355 | 0.69 | 0.578945 |
Target: 5'- cGGGCguGCUGgG-CGcGCUGGCGCu- -3' miRNA: 3'- -CCCGguCGACgUaGCaCGGCCGCGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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