miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1651 5' -61.6 NC_001347.2 + 58 0.67 0.68437
Target:  5'- cGGCCGGgUGgGUgUGUGCCGGguguguCGCGGg -3'
miRNA:   3'- cCCGGUCgACgUA-GCACGGCC------GCGCU- -5'
1651 5' -61.6 NC_001347.2 + 225536 0.68 0.674837
Target:  5'- cGGCCGGCUG-GUCGU--CGGCGCu- -3'
miRNA:   3'- cCCGGUCGACgUAGCAcgGCCGCGcu -5'
1651 5' -61.6 NC_001347.2 + 89620 0.68 0.674837
Target:  5'- cGGGCUuuaaaGGCaaaUGCAccUCGUcGCCGGCGUc- -3'
miRNA:   3'- -CCCGG-----UCG---ACGU--AGCA-CGGCCGCGcu -5'
1651 5' -61.6 NC_001347.2 + 76979 0.68 0.665273
Target:  5'- -uGCCGGC-GCccgcCGUGCCGGUGaCGAg -3'
miRNA:   3'- ccCGGUCGaCGua--GCACGGCCGC-GCU- -5'
1651 5' -61.6 NC_001347.2 + 208115 0.68 0.665273
Target:  5'- cGGCgGaGCcGCGUCGcucGCCGGCGCu- -3'
miRNA:   3'- cCCGgU-CGaCGUAGCa--CGGCCGCGcu -5'
1651 5' -61.6 NC_001347.2 + 36405 0.68 0.665273
Target:  5'- cGGGCUGGCgUGCuguuuucCGUGUugccgacggCGGCGCGGu -3'
miRNA:   3'- -CCCGGUCG-ACGua-----GCACG---------GCCGCGCU- -5'
1651 5' -61.6 NC_001347.2 + 173966 0.68 0.659523
Target:  5'- cGGCUagAGCgcggGCcgCGUGCCugggaacgcgcgcacGGCGCGGu -3'
miRNA:   3'- cCCGG--UCGa---CGuaGCACGG---------------CCGCGCU- -5'
1651 5' -61.6 NC_001347.2 + 201812 0.68 0.649924
Target:  5'- uGGCCGGCUGCAugcacauccacgcguUCGcGCaguGGCGUGc -3'
miRNA:   3'- cCCGGUCGACGU---------------AGCaCGg--CCGCGCu -5'
1651 5' -61.6 NC_001347.2 + 128438 0.68 0.636468
Target:  5'- cGGcGCCuGCUGCGUgGccGUcaagCGGCGCGAc -3'
miRNA:   3'- -CC-CGGuCGACGUAgCa-CG----GCCGCGCU- -5'
1651 5' -61.6 NC_001347.2 + 229660 0.68 0.636468
Target:  5'- nGGCguGUgGCGggUGUGCCGGCGgGGu -3'
miRNA:   3'- cCCGguCGaCGUa-GCACGGCCGCgCU- -5'
1651 5' -61.6 NC_001347.2 + 181 0.68 0.636468
Target:  5'- nGGCguGUgGCGggUGUGCCGGCGgGGu -3'
miRNA:   3'- cCCGguCGaCGUa-GCACGGCCGCgCU- -5'
1651 5' -61.6 NC_001347.2 + 138695 0.68 0.636468
Target:  5'- cGGGCgGG-UGCGUCGgcuagcgGuCUGGUGCGAg -3'
miRNA:   3'- -CCCGgUCgACGUAGCa------C-GGCCGCGCU- -5'
1651 5' -61.6 NC_001347.2 + 1944 0.69 0.607634
Target:  5'- uGGCUgGGCUGCGcggCGggGCCGGCGaCGGg -3'
miRNA:   3'- cCCGG-UCGACGUa--GCa-CGGCCGC-GCU- -5'
1651 5' -61.6 NC_001347.2 + 2355 0.69 0.578945
Target:  5'- cGGGCguGCUGgG-CGcGCUGGCGCu- -3'
miRNA:   3'- -CCCGguCGACgUaGCaCGGCCGCGcu -5'
1651 5' -61.6 NC_001347.2 + 191021 0.69 0.567546
Target:  5'- cGGGUagcGCUGCcucgucgucguccAUCGUGCCGcggaacuGCGCGAg -3'
miRNA:   3'- -CCCGgu-CGACG-------------UAGCACGGC-------CGCGCU- -5'
1651 5' -61.6 NC_001347.2 + 153319 0.7 0.550557
Target:  5'- uGGCCAGCUcGCGUUG-GC-GGCGCu- -3'
miRNA:   3'- cCCGGUCGA-CGUAGCaCGgCCGCGcu -5'
1651 5' -61.6 NC_001347.2 + 15593 0.7 0.531869
Target:  5'- cGGGCCcgcGGCUGCAU--UGCCuGGUGaCGAc -3'
miRNA:   3'- -CCCGG---UCGACGUAgcACGG-CCGC-GCU- -5'
1651 5' -61.6 NC_001347.2 + 89169 0.7 0.531869
Target:  5'- -aGCCuGCUGCGUgGUgaGCCGGUGCu- -3'
miRNA:   3'- ccCGGuCGACGUAgCA--CGGCCGCGcu -5'
1651 5' -61.6 NC_001347.2 + 184939 0.7 0.522611
Target:  5'- -aGCCGuCUGCAgcUCGUcgGCCGGCGUGGg -3'
miRNA:   3'- ccCGGUcGACGU--AGCA--CGGCCGCGCU- -5'
1651 5' -61.6 NC_001347.2 + 165861 0.7 0.522611
Target:  5'- aGGCCGGCgGCAgggacaccgaugUCGaGCCGGCggGCGGg -3'
miRNA:   3'- cCCGGUCGaCGU------------AGCaCGGCCG--CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.