miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1651 5' -61.6 NC_001347.2 + 58 0.67 0.68437
Target:  5'- cGGCCGGgUGgGUgUGUGCCGGguguguCGCGGg -3'
miRNA:   3'- cCCGGUCgACgUA-GCACGGCC------GCGCU- -5'
1651 5' -61.6 NC_001347.2 + 152 0.73 0.369905
Target:  5'- -uGCCGGgUGUGUCGUGCCGGguguguCGCGGg -3'
miRNA:   3'- ccCGGUCgACGUAGCACGGCC------GCGCU- -5'
1651 5' -61.6 NC_001347.2 + 181 0.68 0.636468
Target:  5'- nGGCguGUgGCGggUGUGCCGGCGgGGu -3'
miRNA:   3'- cCCGguCGaCGUa-GCACGGCCGCgCU- -5'
1651 5' -61.6 NC_001347.2 + 1944 0.69 0.607634
Target:  5'- uGGCUgGGCUGCGcggCGggGCCGGCGaCGGg -3'
miRNA:   3'- cCCGG-UCGACGUa--GCa-CGGCCGC-GCU- -5'
1651 5' -61.6 NC_001347.2 + 2217 0.71 0.458907
Target:  5'- cGGGuCCGGCgGCGUCGgggaccgUGCCGcGCGCc- -3'
miRNA:   3'- -CCC-GGUCGaCGUAGC-------ACGGC-CGCGcu -5'
1651 5' -61.6 NC_001347.2 + 2355 0.69 0.578945
Target:  5'- cGGGCguGCUGgG-CGcGCUGGCGCu- -3'
miRNA:   3'- -CCCGguCGACgUaGCaCGGCCGCGcu -5'
1651 5' -61.6 NC_001347.2 + 8787 0.67 0.703314
Target:  5'- cGGaGCCGGCUcagaGCGgaccacgguugaUUGUGCCcggaccgugGGCGCGAc -3'
miRNA:   3'- -CC-CGGUCGA----CGU------------AGCACGG---------CCGCGCU- -5'
1651 5' -61.6 NC_001347.2 + 15593 0.7 0.531869
Target:  5'- cGGGCCcgcGGCUGCAU--UGCCuGGUGaCGAc -3'
miRNA:   3'- -CCCGG---UCGACGUAgcACGG-CCGC-GCU- -5'
1651 5' -61.6 NC_001347.2 + 30609 0.7 0.504286
Target:  5'- cGGCCGGCcGCG--GUGCCGGCGg-- -3'
miRNA:   3'- cCCGGUCGaCGUagCACGGCCGCgcu -5'
1651 5' -61.6 NC_001347.2 + 31586 0.79 0.161026
Target:  5'- aGGCCAGCUGCGUCGUcaaggaCGGCGUGu -3'
miRNA:   3'- cCCGGUCGACGUAGCAcg----GCCGCGCu -5'
1651 5' -61.6 NC_001347.2 + 31672 0.72 0.425718
Target:  5'- cGGGUCGGCUG-GUCGgGCCGuCGCGGa -3'
miRNA:   3'- -CCCGGUCGACgUAGCaCGGCcGCGCU- -5'
1651 5' -61.6 NC_001347.2 + 36405 0.68 0.665273
Target:  5'- cGGGCUGGCgUGCuguuuucCGUGUugccgacggCGGCGCGGu -3'
miRNA:   3'- -CCCGGUCG-ACGua-----GCACG---------GCCGCGCU- -5'
1651 5' -61.6 NC_001347.2 + 38990 0.66 0.740505
Target:  5'- cGGGUCGGCUGCGggguccaccUCGUGCaccaCGGUaGCc- -3'
miRNA:   3'- -CCCGGUCGACGU---------AGCACG----GCCG-CGcu -5'
1651 5' -61.6 NC_001347.2 + 39652 0.67 0.700484
Target:  5'- cGGGCgacacgCAGCUggcuuuuauaggcaGCGaCGUGCaCGGCGCGu -3'
miRNA:   3'- -CCCG------GUCGA--------------CGUaGCACG-GCCGCGCu -5'
1651 5' -61.6 NC_001347.2 + 76979 0.68 0.665273
Target:  5'- -uGCCGGC-GCccgcCGUGCCGGUGaCGAg -3'
miRNA:   3'- ccCGGUCGaCGua--GCACGGCCGC-GCU- -5'
1651 5' -61.6 NC_001347.2 + 82516 0.8 0.149841
Target:  5'- aGGCCAGC-GCAgCGUaGCUGGCGCGAu -3'
miRNA:   3'- cCCGGUCGaCGUaGCA-CGGCCGCGCU- -5'
1651 5' -61.6 NC_001347.2 + 85656 0.66 0.749614
Target:  5'- cGGCC-GCcGCGUCGUGCCucCGCa- -3'
miRNA:   3'- cCCGGuCGaCGUAGCACGGccGCGcu -5'
1651 5' -61.6 NC_001347.2 + 87153 0.66 0.749614
Target:  5'- aGGCCGGCUacggggaaacGCG-CGUGCgGGuCGCa- -3'
miRNA:   3'- cCCGGUCGA----------CGUaGCACGgCC-GCGcu -5'
1651 5' -61.6 NC_001347.2 + 87325 0.66 0.740505
Target:  5'- aGGGCUcgcugaGGCUGUaAUCGcacaGCgCGGCGCGc -3'
miRNA:   3'- -CCCGG------UCGACG-UAGCa---CG-GCCGCGCu -5'
1651 5' -61.6 NC_001347.2 + 88653 0.66 0.785059
Target:  5'- cGGCCugcgcAGCUucgcGCAUCcacuggcGCCGGCGCGc -3'
miRNA:   3'- cCCGG-----UCGA----CGUAGca-----CGGCCGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.