miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1652 3' -60.9 NC_001347.2 + 17755 0.66 0.796893
Target:  5'- -aAGCCGcCGCCGaaGCCUgGGGCAc--- -3'
miRNA:   3'- cgUCGGC-GCGGC--CGGAgCUCGUacau -5'
1652 3' -60.9 NC_001347.2 + 177624 0.66 0.788245
Target:  5'- gGUGGCCGCGCUcuuGGCC--GAGCcgGg- -3'
miRNA:   3'- -CGUCGGCGCGG---CCGGagCUCGuaCau -5'
1652 3' -60.9 NC_001347.2 + 112437 0.66 0.77947
Target:  5'- cCGGCCGUGCuCGGCCUC--GCcUGg- -3'
miRNA:   3'- cGUCGGCGCG-GCCGGAGcuCGuACau -5'
1652 3' -60.9 NC_001347.2 + 165625 0.66 0.77947
Target:  5'- gGCAGCCGC-CC-GCCggCGGGCAg--- -3'
miRNA:   3'- -CGUCGGCGcGGcCGGa-GCUCGUacau -5'
1652 3' -60.9 NC_001347.2 + 229536 0.66 0.77947
Target:  5'- cGCGGCgggugggugUGUGCCGGgUgugucgCGGGCGUGUGu -3'
miRNA:   3'- -CGUCG---------GCGCGGCCgGa-----GCUCGUACAU- -5'
1652 3' -60.9 NC_001347.2 + 67354 0.66 0.77947
Target:  5'- cGCAGCCGcCGCCGucgccgccGCCUCGGacuccuGCAc--- -3'
miRNA:   3'- -CGUCGGC-GCGGC--------CGGAGCU------CGUacau -5'
1652 3' -60.9 NC_001347.2 + 5887 0.66 0.770576
Target:  5'- cGCAGUCGCaCCacaGGCCgugCGAGuCGUGg- -3'
miRNA:   3'- -CGUCGGCGcGG---CCGGa--GCUC-GUACau -5'
1652 3' -60.9 NC_001347.2 + 136097 0.66 0.770576
Target:  5'- aCGGaCCgGCGCCgGGCCUCG-GCcgGg- -3'
miRNA:   3'- cGUC-GG-CGCGG-CCGGAGCuCGuaCau -5'
1652 3' -60.9 NC_001347.2 + 77990 0.66 0.770576
Target:  5'- gGCGGCCGaacCGCUGGCUUaUGAGCGc--- -3'
miRNA:   3'- -CGUCGGC---GCGGCCGGA-GCUCGUacau -5'
1652 3' -60.9 NC_001347.2 + 157848 0.66 0.770576
Target:  5'- cGCAGCCuuGCGCCGGUacgcCGGGaagGUAc -3'
miRNA:   3'- -CGUCGG--CGCGGCCGga--GCUCguaCAU- -5'
1652 3' -60.9 NC_001347.2 + 142438 0.66 0.761569
Target:  5'- gGC-GCgGCGuCCGGCgUCGGGgGUGg- -3'
miRNA:   3'- -CGuCGgCGC-GGCCGgAGCUCgUACau -5'
1652 3' -60.9 NC_001347.2 + 129208 0.66 0.761569
Target:  5'- cGUGGCCGCGUCcGCCUCGGuGCc---- -3'
miRNA:   3'- -CGUCGGCGCGGcCGGAGCU-CGuacau -5'
1652 3' -60.9 NC_001347.2 + 119094 0.66 0.761569
Target:  5'- cGCAGCCGCGCuaugCGGCC-CG-GCc---- -3'
miRNA:   3'- -CGUCGGCGCG----GCCGGaGCuCGuacau -5'
1652 3' -60.9 NC_001347.2 + 162119 0.66 0.761569
Target:  5'- -gGGCCGCGUCGGCCUgcUGAucuaGCAg--- -3'
miRNA:   3'- cgUCGGCGCGGCCGGA--GCU----CGUacau -5'
1652 3' -60.9 NC_001347.2 + 156832 0.66 0.752458
Target:  5'- -gGGuCCGCGCguCGGCCUCuggagGAGCAcGUGa -3'
miRNA:   3'- cgUC-GGCGCG--GCCGGAG-----CUCGUaCAU- -5'
1652 3' -60.9 NC_001347.2 + 24136 0.66 0.743251
Target:  5'- --cGCCGCGCCGGCCgucuccaccaaUCaAGCcUGUu -3'
miRNA:   3'- cguCGGCGCGGCCGG-----------AGcUCGuACAu -5'
1652 3' -60.9 NC_001347.2 + 96393 0.66 0.742325
Target:  5'- gGCGGCCGUgcgcaucGCCuGCCUCauccgacaGAGCGUGc- -3'
miRNA:   3'- -CGUCGGCG-------CGGcCGGAG--------CUCGUACau -5'
1652 3' -60.9 NC_001347.2 + 106213 0.67 0.733955
Target:  5'- -gGGCC-CGCCGGCCaCGAGCc---- -3'
miRNA:   3'- cgUCGGcGCGGCCGGaGCUCGuacau -5'
1652 3' -60.9 NC_001347.2 + 148648 0.67 0.733021
Target:  5'- cGCAGCCcggcuccGCGCaGGgCUCGGGCAa--- -3'
miRNA:   3'- -CGUCGG-------CGCGgCCgGAGCUCGUacau -5'
1652 3' -60.9 NC_001347.2 + 16761 0.67 0.728339
Target:  5'- aCAGCCuagaggaacuuuuucGCGCCGGCCUCauGAagGUGUAc -3'
miRNA:   3'- cGUCGG---------------CGCGGCCGGAG--CUcgUACAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.