miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1652 3' -60.9 NC_001347.2 + 56 0.69 0.608653
Target:  5'- cGCGGCCggguggguguGUGCCGGgUgugucgCGGGCGUGUGu -3'
miRNA:   3'- -CGUCGG----------CGCGGCCgGa-----GCUCGUACAU- -5'
1652 3' -60.9 NC_001347.2 + 161 0.67 0.72458
Target:  5'- --uGUCGUGCCGGgUgugucgCGGGCGUGUGg -3'
miRNA:   3'- cguCGGCGCGGCCgGa-----GCUCGUACAU- -5'
1652 3' -60.9 NC_001347.2 + 227 0.68 0.667086
Target:  5'- gGCGG-UGUGCgCGGCCUCGGG-GUGUGc -3'
miRNA:   3'- -CGUCgGCGCG-GCCGGAGCUCgUACAU- -5'
1652 3' -60.9 NC_001347.2 + 1725 0.69 0.579559
Target:  5'- -gAGCUGCGCCGGCggUGGGCcgGc- -3'
miRNA:   3'- cgUCGGCGCGGCCGgaGCUCGuaCau -5'
1652 3' -60.9 NC_001347.2 + 5887 0.66 0.770576
Target:  5'- cGCAGUCGCaCCacaGGCCgugCGAGuCGUGg- -3'
miRNA:   3'- -CGUCGGCGcGG---CCGGa--GCUC-GUACau -5'
1652 3' -60.9 NC_001347.2 + 16761 0.67 0.728339
Target:  5'- aCAGCCuagaggaacuuuuucGCGCCGGCCUCauGAagGUGUAc -3'
miRNA:   3'- cGUCGG---------------CGCGGCCGGAG--CUcgUACAU- -5'
1652 3' -60.9 NC_001347.2 + 17755 0.66 0.796893
Target:  5'- -aAGCCGcCGCCGaaGCCUgGGGCAc--- -3'
miRNA:   3'- cgUCGGC-GCGGC--CGGAgCUCGUacau -5'
1652 3' -60.9 NC_001347.2 + 24136 0.66 0.743251
Target:  5'- --cGCCGCGCCGGCCgucuccaccaaUCaAGCcUGUu -3'
miRNA:   3'- cguCGGCGCGGCCGG-----------AGcUCGuACAu -5'
1652 3' -60.9 NC_001347.2 + 24340 0.68 0.628138
Target:  5'- aGCGGCCGUGgUGGCCgugcUGGGCuggGUGc -3'
miRNA:   3'- -CGUCGGCGCgGCCGGa---GCUCGua-CAU- -5'
1652 3' -60.9 NC_001347.2 + 38005 0.76 0.259278
Target:  5'- aGCAGCCGcCGCgCGGCCUCG-GCGg--- -3'
miRNA:   3'- -CGUCGGC-GCG-GCCGGAGCuCGUacau -5'
1652 3' -60.9 NC_001347.2 + 67354 0.66 0.77947
Target:  5'- cGCAGCCGcCGCCGucgccgccGCCUCGGacuccuGCAc--- -3'
miRNA:   3'- -CGUCGGC-GCGGC--------CGGAGCU------CGUacau -5'
1652 3' -60.9 NC_001347.2 + 74913 0.71 0.503863
Target:  5'- aGCAcGuuGuCGCUGGuguagcCCUCGAGCGUGUAc -3'
miRNA:   3'- -CGU-CggC-GCGGCC------GGAGCUCGUACAU- -5'
1652 3' -60.9 NC_001347.2 + 76983 0.7 0.531823
Target:  5'- gGCGcccGCCGUGCCGGUgaCGAGCAg--- -3'
miRNA:   3'- -CGU---CGGCGCGGCCGgaGCUCGUacau -5'
1652 3' -60.9 NC_001347.2 + 77990 0.66 0.770576
Target:  5'- gGCGGCCGaacCGCUGGCUUaUGAGCGc--- -3'
miRNA:   3'- -CGUCGGC---GCGGCCGGA-GCUCGUacau -5'
1652 3' -60.9 NC_001347.2 + 81634 0.7 0.522437
Target:  5'- cGCAcggcGCCGcCGCCGGCCUCG-GUAc--- -3'
miRNA:   3'- -CGU----CGGC-GCGGCCGGAGCuCGUacau -5'
1652 3' -60.9 NC_001347.2 + 85657 0.67 0.715132
Target:  5'- gGCcGCCGCGUCGuGCCUcCGcAGCAcGUu -3'
miRNA:   3'- -CGuCGGCGCGGC-CGGA-GC-UCGUaCAu -5'
1652 3' -60.9 NC_001347.2 + 87010 0.7 0.54127
Target:  5'- gGCAgGCCGCGCCGGCgUgcuuaaaGAGCAa--- -3'
miRNA:   3'- -CGU-CGGCGCGGCCGgAg------CUCGUacau -5'
1652 3' -60.9 NC_001347.2 + 88542 0.69 0.618391
Target:  5'- --cGCCGcCGCCGGCCUCGucGGCc---- -3'
miRNA:   3'- cguCGGC-GCGGCCGGAGC--UCGuacau -5'
1652 3' -60.9 NC_001347.2 + 96393 0.66 0.742325
Target:  5'- gGCGGCCGUgcgcaucGCCuGCCUCauccgacaGAGCGUGc- -3'
miRNA:   3'- -CGUCGGCG-------CGGcCGGAG--------CUCGUACau -5'
1652 3' -60.9 NC_001347.2 + 106213 0.67 0.733955
Target:  5'- -gGGCC-CGCCGGCCaCGAGCc---- -3'
miRNA:   3'- cgUCGGcGCGGCCGGaGCUCGuacau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.