miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1652 5' -58.7 NC_001347.2 + 174692 0.66 0.888087
Target:  5'- gUCGCGGUCCGguuUCCGCggcuucgugcaggaGGGCCUg -3'
miRNA:   3'- gAGCGUCAGGUac-AGGUGg-------------UCCGGGu -5'
1652 5' -58.7 NC_001347.2 + 148646 0.66 0.878701
Target:  5'- uUCGCAG-CCcgGcUCCGCgcaGGGCUCGg -3'
miRNA:   3'- gAGCGUCaGGuaC-AGGUGg--UCCGGGU- -5'
1652 5' -58.7 NC_001347.2 + 109643 0.66 0.878701
Target:  5'- aUC-CGG-CCGUGUUCACCuGGCCg- -3'
miRNA:   3'- gAGcGUCaGGUACAGGUGGuCCGGgu -5'
1652 5' -58.7 NC_001347.2 + 278 0.67 0.808619
Target:  5'- cCUCGCGG-CCGUuauuucccccgcgGUCC-CCAGGgCCGu -3'
miRNA:   3'- -GAGCGUCaGGUA-------------CAGGuGGUCCgGGU- -5'
1652 5' -58.7 NC_001347.2 + 229757 0.67 0.808619
Target:  5'- cCUCGCGG-CCGUuauuucccccgcgGUCC-CCAGGgCCGu -3'
miRNA:   3'- -GAGCGUCaGGUA-------------CAGGuGGUCCgGGU- -5'
1652 5' -58.7 NC_001347.2 + 130727 0.68 0.783465
Target:  5'- -cCGCGGUCCcuccaGUCCcCCGGcGCCCc -3'
miRNA:   3'- gaGCGUCAGGua---CAGGuGGUC-CGGGu -5'
1652 5' -58.7 NC_001347.2 + 85874 0.68 0.764579
Target:  5'- gCUCGC-GUCCGUGcaucacguaacauUCCACCAGcguuuugacuaaGCCCu -3'
miRNA:   3'- -GAGCGuCAGGUAC-------------AGGUGGUC------------CGGGu -5'
1652 5' -58.7 NC_001347.2 + 135567 0.7 0.650714
Target:  5'- gUCGCccGUCCccaccaccGUCCACCcGGCCCAc -3'
miRNA:   3'- gAGCGu-CAGGua------CAGGUGGuCCGGGU- -5'
1652 5' -58.7 NC_001347.2 + 37985 0.7 0.650714
Target:  5'- gCUCGCGGUCCAgcucgGgcagcagCCGCCGcgcGGCCUc -3'
miRNA:   3'- -GAGCGUCAGGUa----Ca------GGUGGU---CCGGGu -5'
1652 5' -58.7 NC_001347.2 + 100556 0.71 0.631029
Target:  5'- gUCGUAGguaCCAgaUGUUCACCGuGGCCCu -3'
miRNA:   3'- gAGCGUCa--GGU--ACAGGUGGU-CCGGGu -5'
1652 5' -58.7 NC_001347.2 + 7401 0.75 0.39989
Target:  5'- uUCGUAGUCCAacUCCACgacgaCGGGCCCAc -3'
miRNA:   3'- gAGCGUCAGGUacAGGUG-----GUCCGGGU- -5'
1652 5' -58.7 NC_001347.2 + 125351 1.08 0.002911
Target:  5'- uCUCGCAGUCCAUGUCCACCAGGCCCAu -3'
miRNA:   3'- -GAGCGUCAGGUACAGGUGGUCCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.