miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1653 3' -56.7 NC_001347.2 + 39810 0.66 0.946921
Target:  5'- cCGGgcgcgCACCCAUcuagguggACGCCCGA-CAUc -3'
miRNA:   3'- aGCCaaa--GUGGGUG--------UGCGGGCUcGUG- -5'
1653 3' -56.7 NC_001347.2 + 172027 0.66 0.945651
Target:  5'- aUCGGUUgccgcggcucuccaUCGCCagCGCGCGCUgGgaAGCGCu -3'
miRNA:   3'- -AGCCAA--------------AGUGG--GUGUGCGGgC--UCGUG- -5'
1653 3' -56.7 NC_001347.2 + 78411 0.66 0.945651
Target:  5'- gUCGGgcugcugccgccgcCACCCggcccgGCgGCGCCCGAGCGg -3'
miRNA:   3'- -AGCCaaa-----------GUGGG------UG-UGCGGGCUCGUg -5'
1653 3' -56.7 NC_001347.2 + 88666 0.66 0.942611
Target:  5'- uUCGcg--CAUCCACugGCgCCG-GCGCg -3'
miRNA:   3'- -AGCcaaaGUGGGUGugCG-GGCuCGUG- -5'
1653 3' -56.7 NC_001347.2 + 144087 0.66 0.942611
Target:  5'- gUCGGaUUUUACCUACugGUCCc-GUACc -3'
miRNA:   3'- -AGCC-AAAGUGGGUGugCGGGcuCGUG- -5'
1653 3' -56.7 NC_001347.2 + 106773 0.66 0.942611
Target:  5'- cCGGccUUCucucuuuuCCCGCACGCCCaGGCu- -3'
miRNA:   3'- aGCCa-AAGu-------GGGUGUGCGGGcUCGug -5'
1653 3' -56.7 NC_001347.2 + 191946 0.66 0.942611
Target:  5'- gCGGUUuucUCGCCCACcuCGCUCGu-CGCu -3'
miRNA:   3'- aGCCAA---AGUGGGUGu-GCGGGCucGUG- -5'
1653 3' -56.7 NC_001347.2 + 197238 0.66 0.942611
Target:  5'- gUCGGaggUCACgCCACAUgaaGCCgCGgcGGCGCg -3'
miRNA:   3'- -AGCCaa-AGUG-GGUGUG---CGG-GC--UCGUG- -5'
1653 3' -56.7 NC_001347.2 + 65756 0.66 0.938079
Target:  5'- aUGGUg-UACCCG-GCaCCCGAGCACg -3'
miRNA:   3'- aGCCAaaGUGGGUgUGcGGGCUCGUG- -5'
1653 3' -56.7 NC_001347.2 + 139342 0.66 0.938079
Target:  5'- gCGGUgggCugUCAgGCGUCCGAG-ACg -3'
miRNA:   3'- aGCCAaa-GugGGUgUGCGGGCUCgUG- -5'
1653 3' -56.7 NC_001347.2 + 37917 0.66 0.938079
Target:  5'- gCGGcucggCGCCCACagcgcgGCGCgCGGGUGCa -3'
miRNA:   3'- aGCCaaa--GUGGGUG------UGCGgGCUCGUG- -5'
1653 3' -56.7 NC_001347.2 + 58596 0.66 0.938079
Target:  5'- cCGGgg-CAUCCGCuACuCCCGAGCuCa -3'
miRNA:   3'- aGCCaaaGUGGGUG-UGcGGGCUCGuG- -5'
1653 3' -56.7 NC_001347.2 + 44328 0.66 0.933324
Target:  5'- cCGccgUUCucCCCAUcCGUCCGAGCGCc -3'
miRNA:   3'- aGCca-AAGu-GGGUGuGCGGGCUCGUG- -5'
1653 3' -56.7 NC_001347.2 + 196955 0.66 0.928346
Target:  5'- cCGGggcugUCGCgCGCcgccgACGCCCGAgacgGCGCg -3'
miRNA:   3'- aGCCaa---AGUGgGUG-----UGCGGGCU----CGUG- -5'
1653 3' -56.7 NC_001347.2 + 200221 0.67 0.923143
Target:  5'- cCGGgcUCGCCCAC-UGaCUCG-GCGCg -3'
miRNA:   3'- aGCCaaAGUGGGUGuGC-GGGCuCGUG- -5'
1653 3' -56.7 NC_001347.2 + 41337 0.67 0.923143
Target:  5'- -aGGcUUUCGCgCACACGauuCCGAGgACg -3'
miRNA:   3'- agCC-AAAGUGgGUGUGCg--GGCUCgUG- -5'
1653 3' -56.7 NC_001347.2 + 195239 0.67 0.912064
Target:  5'- cCGGUgagCAgCCAUAcauCGCCCGcGUACg -3'
miRNA:   3'- aGCCAaa-GUgGGUGU---GCGGGCuCGUG- -5'
1653 3' -56.7 NC_001347.2 + 39103 0.67 0.910326
Target:  5'- gCGGcgUCACCCGCGCguagaauccguacgGCcguCCGAGCGg -3'
miRNA:   3'- aGCCaaAGUGGGUGUG--------------CG---GGCUCGUg -5'
1653 3' -56.7 NC_001347.2 + 718 0.67 0.906191
Target:  5'- -aGGcggCGCCaGCACGCgCCGuGCACg -3'
miRNA:   3'- agCCaaaGUGGgUGUGCG-GGCuCGUG- -5'
1653 3' -56.7 NC_001347.2 + 189325 0.67 0.905592
Target:  5'- aCGucaUUUCGCCucccaguCAgACGCCCGAGCAg -3'
miRNA:   3'- aGCc--AAAGUGG-------GUgUGCGGGCUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.