miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1653 3' -56.7 NC_001347.2 + 103869 0.67 0.900098
Target:  5'- gUGGUUUCccgcuACCCACA-GCCUucGCGCa -3'
miRNA:   3'- aGCCAAAG-----UGGGUGUgCGGGcuCGUG- -5'
1653 3' -56.7 NC_001347.2 + 2288 0.67 0.900098
Target:  5'- uUCGGguacuGCCCGCugGa-CGGGCACg -3'
miRNA:   3'- -AGCCaaag-UGGGUGugCggGCUCGUG- -5'
1653 3' -56.7 NC_001347.2 + 85590 0.67 0.900098
Target:  5'- aCGGggucucgcgUUCACCgCGaaacucCACGCCCG-GCACc -3'
miRNA:   3'- aGCCa--------AAGUGG-GU------GUGCGGGCuCGUG- -5'
1653 3' -56.7 NC_001347.2 + 80500 0.67 0.893786
Target:  5'- cUCGG-----CCCACACGCCguggaaGGGCGCg -3'
miRNA:   3'- -AGCCaaaguGGGUGUGCGGg-----CUCGUG- -5'
1653 3' -56.7 NC_001347.2 + 194386 0.68 0.88726
Target:  5'- gCGGUcugcgugaugccUggACCCACaaGCGCCCGAagccGCGCg -3'
miRNA:   3'- aGCCA------------AagUGGGUG--UGCGGGCU----CGUG- -5'
1653 3' -56.7 NC_001347.2 + 195172 0.68 0.885261
Target:  5'- cUGGUUUCguuGCCCACGgcguuuuugcuucuCGCCguuggacuCGAGCGCa -3'
miRNA:   3'- aGCCAAAG---UGGGUGU--------------GCGG--------GCUCGUG- -5'
1653 3' -56.7 NC_001347.2 + 588 0.68 0.86643
Target:  5'- gUCGGgcgucCACCUagauggguGCGCGCCCGGGagGCg -3'
miRNA:   3'- -AGCCaaa--GUGGG--------UGUGCGGGCUCg-UG- -5'
1653 3' -56.7 NC_001347.2 + 192229 0.68 0.854584
Target:  5'- aCGGUguauauaaaccgcgUCGgCCuCGCcgGCCCGAGCGCg -3'
miRNA:   3'- aGCCAa-------------AGUgGGuGUG--CGGGCUCGUG- -5'
1653 3' -56.7 NC_001347.2 + 2461 0.68 0.853827
Target:  5'- cUGGgacgcgcugcaccugCACCCGCGCGCCgcgcugUGGGCGCg -3'
miRNA:   3'- aGCCaaa------------GUGGGUGUGCGG------GCUCGUG- -5'
1653 3' -56.7 NC_001347.2 + 178453 0.68 0.851546
Target:  5'- cCGGUggaggugCGCUCcCACGUCCGucAGCACg -3'
miRNA:   3'- aGCCAaa-----GUGGGuGUGCGGGC--UCGUG- -5'
1653 3' -56.7 NC_001347.2 + 126151 0.68 0.851546
Target:  5'- cCGGcaUCuuuUCCGCACGCCCGuGCu- -3'
miRNA:   3'- aGCCaaAGu--GGGUGUGCGGGCuCGug -5'
1653 3' -56.7 NC_001347.2 + 44367 0.69 0.846933
Target:  5'- cCGGccgaUUCGCCCGCcggggcuucuggagaACGCCgGGGCAg -3'
miRNA:   3'- aGCCa---AAGUGGGUG---------------UGCGGgCUCGUg -5'
1653 3' -56.7 NC_001347.2 + 196787 0.69 0.843821
Target:  5'- gCGGUUUCGCaaACACGUCCacgaucugaAGCGCa -3'
miRNA:   3'- aGCCAAAGUGggUGUGCGGGc--------UCGUG- -5'
1653 3' -56.7 NC_001347.2 + 194440 0.69 0.843821
Target:  5'- gCGGggUUCACCUGCAgCGCUaCGuGCGCg -3'
miRNA:   3'- aGCCa-AAGUGGGUGU-GCGG-GCuCGUG- -5'
1653 3' -56.7 NC_001347.2 + 228191 0.69 0.835915
Target:  5'- cUCGGccggCAUCCACGCGCCaCGuuCACc -3'
miRNA:   3'- -AGCCaaa-GUGGGUGUGCGG-GCucGUG- -5'
1653 3' -56.7 NC_001347.2 + 188739 0.69 0.835915
Target:  5'- cCGcGUUUCACCgACACGCUgGuGgACa -3'
miRNA:   3'- aGC-CAAAGUGGgUGUGCGGgCuCgUG- -5'
1653 3' -56.7 NC_001347.2 + 178720 0.69 0.811184
Target:  5'- cCGGggcUCAgCCuucuCACGCCCcGGCGCa -3'
miRNA:   3'- aGCCaa-AGUgGGu---GUGCGGGcUCGUG- -5'
1653 3' -56.7 NC_001347.2 + 130955 0.7 0.793921
Target:  5'- cUCGGUgguaaugcgCugCCAgACGCCCGAuUACg -3'
miRNA:   3'- -AGCCAaa-------GugGGUgUGCGGGCUcGUG- -5'
1653 3' -56.7 NC_001347.2 + 116882 0.7 0.785081
Target:  5'- uUCGc---CGCCCGCGCGCCCcccGGGCAa -3'
miRNA:   3'- -AGCcaaaGUGGGUGUGCGGG---CUCGUg -5'
1653 3' -56.7 NC_001347.2 + 189429 0.7 0.770671
Target:  5'- cCGGUgcugggcaagcgagUCGCgacgCCGCAcgcgucCGCCCGAGCGCa -3'
miRNA:   3'- aGCCAa-------------AGUG----GGUGU------GCGGGCUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.