miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1653 5' -56.6 NC_001347.2 + 228753 0.66 0.954228
Target:  5'- gGACGGgguagccgagugcuGCGCCCUCGCCaauGUugugaAGugGAu -3'
miRNA:   3'- gUUGCC--------------UGUGGGAGCGGc--CA-----UCugCU- -5'
1653 5' -56.6 NC_001347.2 + 113176 0.66 0.951537
Target:  5'- gAACGcGCGCCCcagcCGCCGGcguGGCGGc -3'
miRNA:   3'- gUUGCcUGUGGGa---GCGGCCau-CUGCU- -5'
1653 5' -56.6 NC_001347.2 + 100198 0.66 0.951537
Target:  5'- -cGCGGccuCGCCCagguaGCCGG-AGACGGc -3'
miRNA:   3'- guUGCCu--GUGGGag---CGGCCaUCUGCU- -5'
1653 5' -56.6 NC_001347.2 + 9100 0.66 0.951537
Target:  5'- aGACGcGACACaCCUCGUCGGacaGCGu -3'
miRNA:   3'- gUUGC-CUGUG-GGAGCGGCCaucUGCu -5'
1653 5' -56.6 NC_001347.2 + 100754 0.66 0.947513
Target:  5'- aAGCGGGCGUCCUCGCCcGUcGAUa- -3'
miRNA:   3'- gUUGCCUGUGGGAGCGGcCAuCUGcu -5'
1653 5' -56.6 NC_001347.2 + 225574 0.66 0.947513
Target:  5'- aCGGCGGugacuuagcCGCCCgUgGCCGGgagaAGACGGa -3'
miRNA:   3'- -GUUGCCu--------GUGGG-AgCGGCCa---UCUGCU- -5'
1653 5' -56.6 NC_001347.2 + 80263 0.66 0.947513
Target:  5'- aGACGGAggagaCACCgUCGCCGuGcccgaagaGGACGAa -3'
miRNA:   3'- gUUGCCU-----GUGGgAGCGGC-Ca-------UCUGCU- -5'
1653 5' -56.6 NC_001347.2 + 170415 0.66 0.943274
Target:  5'- aGAUGGACACCgUgucgcggcacagUGCCGGUuuGGGCa- -3'
miRNA:   3'- gUUGCCUGUGGgA------------GCGGCCA--UCUGcu -5'
1653 5' -56.6 NC_001347.2 + 136169 0.66 0.940626
Target:  5'- -uGCGGACcgcagcacggccggaACCCUgccgcggacugCGCCGGgGGGCGGc -3'
miRNA:   3'- guUGCCUG---------------UGGGA-----------GCGGCCaUCUGCU- -5'
1653 5' -56.6 NC_001347.2 + 39339 0.66 0.938817
Target:  5'- gGAgGGGCGCCCggcggcccgCGggguucuacCCGGUGGACGc -3'
miRNA:   3'- gUUgCCUGUGGGa--------GC---------GGCCAUCUGCu -5'
1653 5' -56.6 NC_001347.2 + 136095 0.67 0.929247
Target:  5'- gGACGGACcggcgccgGgCCUCgGCCGGggagGGugGGg -3'
miRNA:   3'- gUUGCCUG--------UgGGAG-CGGCCa---UCugCU- -5'
1653 5' -56.6 NC_001347.2 + 209989 0.67 0.918796
Target:  5'- uGACGGAguCCCgcacCGCCGGgucGCGGu -3'
miRNA:   3'- gUUGCCUguGGGa---GCGGCCaucUGCU- -5'
1653 5' -56.6 NC_001347.2 + 158176 0.67 0.913241
Target:  5'- --cUGGACGCgCgCUCGCUGGUGGcCGu -3'
miRNA:   3'- guuGCCUGUG-G-GAGCGGCCAUCuGCu -5'
1653 5' -56.6 NC_001347.2 + 162155 0.67 0.913241
Target:  5'- aAACGGGCugCUggaaGUCGGcGGGCGGg -3'
miRNA:   3'- gUUGCCUGugGGag--CGGCCaUCUGCU- -5'
1653 5' -56.6 NC_001347.2 + 66575 0.67 0.913241
Target:  5'- gAACGaGgGCCCUCGCCGGcGGcCGu -3'
miRNA:   3'- gUUGCcUgUGGGAGCGGCCaUCuGCu -5'
1653 5' -56.6 NC_001347.2 + 140040 0.68 0.907467
Target:  5'- uCGGCGcGGCAUCCcagCGCCGGcGGuACGGc -3'
miRNA:   3'- -GUUGC-CUGUGGGa--GCGGCCaUC-UGCU- -5'
1653 5' -56.6 NC_001347.2 + 113232 0.68 0.907467
Target:  5'- uCGGCGGACGCCgCUuuaauaucgcaCGCCGccucAGGCGAa -3'
miRNA:   3'- -GUUGCCUGUGG-GA-----------GCGGCca--UCUGCU- -5'
1653 5' -56.6 NC_001347.2 + 94960 0.68 0.895272
Target:  5'- aGACGGA-GCCCUCGagcgUGG-AGACGAg -3'
miRNA:   3'- gUUGCCUgUGGGAGCg---GCCaUCUGCU- -5'
1653 5' -56.6 NC_001347.2 + 130746 0.68 0.8754
Target:  5'- --cCGG-CGCCcCUCGCCGGUGucCGGa -3'
miRNA:   3'- guuGCCuGUGG-GAGCGGCCAUcuGCU- -5'
1653 5' -56.6 NC_001347.2 + 49216 0.69 0.861144
Target:  5'- gGACGGACcuagauacggaACCUUUGUuguugaCGGUGGACGGg -3'
miRNA:   3'- gUUGCCUG-----------UGGGAGCG------GCCAUCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.