miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1653 5' -56.6 NC_001347.2 + 182212 0.69 0.861144
Target:  5'- uGGCGGGCugCgUCGCCuucggugacgucGGUGGugGc -3'
miRNA:   3'- gUUGCCUGugGgAGCGG------------CCAUCugCu -5'
1653 5' -56.6 NC_001347.2 + 161350 0.69 0.853727
Target:  5'- gGGCaGGACuCCCUCGuuGGagAGACGc -3'
miRNA:   3'- gUUG-CCUGuGGGAGCggCCa-UCUGCu -5'
1653 5' -56.6 NC_001347.2 + 125261 0.69 0.841479
Target:  5'- -cGCGGACGCCgCUuucccccugaacgacCGCCGGUGG-CGu -3'
miRNA:   3'- guUGCCUGUGG-GA---------------GCGGCCAUCuGCu -5'
1653 5' -56.6 NC_001347.2 + 191418 0.7 0.822273
Target:  5'- -cACGGA-GCUCUCGCUGGUGGAgcaGAg -3'
miRNA:   3'- guUGCCUgUGGGAGCGGCCAUCUg--CU- -5'
1653 5' -56.6 NC_001347.2 + 76979 0.7 0.788275
Target:  5'- -uGCcGGCGCCCgccgUGCCGGU-GACGAg -3'
miRNA:   3'- guUGcCUGUGGGa---GCGGCCAuCUGCU- -5'
1653 5' -56.6 NC_001347.2 + 39624 0.7 0.787396
Target:  5'- -cGCGGACGCCUUCGUCGcccGUgugccgcGGGCGAc -3'
miRNA:   3'- guUGCCUGUGGGAGCGGC---CA-------UCUGCU- -5'
1653 5' -56.6 NC_001347.2 + 150300 0.71 0.765035
Target:  5'- uGACGGACagcagauccguaucuACaCCUCGCUGcUGGACGAg -3'
miRNA:   3'- gUUGCCUG---------------UG-GGAGCGGCcAUCUGCU- -5'
1653 5' -56.6 NC_001347.2 + 1749 0.71 0.76139
Target:  5'- aCGACGGugGCgCUgcagaCGCCGGgcAGGCGAc -3'
miRNA:   3'- -GUUGCCugUGgGA-----GCGGCCa-UCUGCU- -5'
1653 5' -56.6 NC_001347.2 + 8217 0.72 0.724105
Target:  5'- aCAGCGGcgcAUACCCaCGCCGccGUGGGCGGu -3'
miRNA:   3'- -GUUGCC---UGUGGGaGCGGC--CAUCUGCU- -5'
1653 5' -56.6 NC_001347.2 + 78691 0.72 0.71458
Target:  5'- gCGACGcGGCGCCCUuccgucCGCUGGcGGugGAa -3'
miRNA:   3'- -GUUGC-CUGUGGGA------GCGGCCaUCugCU- -5'
1653 5' -56.6 NC_001347.2 + 29240 0.72 0.675916
Target:  5'- -cGCGGAUcgaguGCCgaCGCCGGUGGAgGAc -3'
miRNA:   3'- guUGCCUG-----UGGgaGCGGCCAUCUgCU- -5'
1653 5' -56.6 NC_001347.2 + 73721 0.73 0.646543
Target:  5'- -cGCGGGCACCgC-CGCCGG-AGGCGc -3'
miRNA:   3'- guUGCCUGUGG-GaGCGGCCaUCUGCu -5'
1653 5' -56.6 NC_001347.2 + 78299 0.73 0.646543
Target:  5'- gGACcuGACcCCCUCGCUGGUGGACc- -3'
miRNA:   3'- gUUGc-CUGuGGGAGCGGCCAUCUGcu -5'
1653 5' -56.6 NC_001347.2 + 124543 1.08 0.005101
Target:  5'- gCAACGGACACCCUCGCCGGUAGACGAu -3'
miRNA:   3'- -GUUGCCUGUGGGAGCGGCCAUCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.