miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1653 5' -56.6 NC_001347.2 + 1749 0.71 0.76139
Target:  5'- aCGACGGugGCgCUgcagaCGCCGGgcAGGCGAc -3'
miRNA:   3'- -GUUGCCugUGgGA-----GCGGCCa-UCUGCU- -5'
1653 5' -56.6 NC_001347.2 + 8217 0.72 0.724105
Target:  5'- aCAGCGGcgcAUACCCaCGCCGccGUGGGCGGu -3'
miRNA:   3'- -GUUGCC---UGUGGGaGCGGC--CAUCUGCU- -5'
1653 5' -56.6 NC_001347.2 + 9100 0.66 0.951537
Target:  5'- aGACGcGACACaCCUCGUCGGacaGCGu -3'
miRNA:   3'- gUUGC-CUGUG-GGAGCGGCCaucUGCu -5'
1653 5' -56.6 NC_001347.2 + 29240 0.72 0.675916
Target:  5'- -cGCGGAUcgaguGCCgaCGCCGGUGGAgGAc -3'
miRNA:   3'- guUGCCUG-----UGGgaGCGGCCAUCUgCU- -5'
1653 5' -56.6 NC_001347.2 + 39339 0.66 0.938817
Target:  5'- gGAgGGGCGCCCggcggcccgCGggguucuacCCGGUGGACGc -3'
miRNA:   3'- gUUgCCUGUGGGa--------GC---------GGCCAUCUGCu -5'
1653 5' -56.6 NC_001347.2 + 39624 0.7 0.787396
Target:  5'- -cGCGGACGCCUUCGUCGcccGUgugccgcGGGCGAc -3'
miRNA:   3'- guUGCCUGUGGGAGCGGC---CA-------UCUGCU- -5'
1653 5' -56.6 NC_001347.2 + 49216 0.69 0.861144
Target:  5'- gGACGGACcuagauacggaACCUUUGUuguugaCGGUGGACGGg -3'
miRNA:   3'- gUUGCCUG-----------UGGGAGCG------GCCAUCUGCU- -5'
1653 5' -56.6 NC_001347.2 + 66575 0.67 0.913241
Target:  5'- gAACGaGgGCCCUCGCCGGcGGcCGu -3'
miRNA:   3'- gUUGCcUgUGGGAGCGGCCaUCuGCu -5'
1653 5' -56.6 NC_001347.2 + 73721 0.73 0.646543
Target:  5'- -cGCGGGCACCgC-CGCCGG-AGGCGc -3'
miRNA:   3'- guUGCCUGUGG-GaGCGGCCaUCUGCu -5'
1653 5' -56.6 NC_001347.2 + 76979 0.7 0.788275
Target:  5'- -uGCcGGCGCCCgccgUGCCGGU-GACGAg -3'
miRNA:   3'- guUGcCUGUGGGa---GCGGCCAuCUGCU- -5'
1653 5' -56.6 NC_001347.2 + 78299 0.73 0.646543
Target:  5'- gGACcuGACcCCCUCGCUGGUGGACc- -3'
miRNA:   3'- gUUGc-CUGuGGGAGCGGCCAUCUGcu -5'
1653 5' -56.6 NC_001347.2 + 78691 0.72 0.71458
Target:  5'- gCGACGcGGCGCCCUuccgucCGCUGGcGGugGAa -3'
miRNA:   3'- -GUUGC-CUGUGGGA------GCGGCCaUCugCU- -5'
1653 5' -56.6 NC_001347.2 + 80263 0.66 0.947513
Target:  5'- aGACGGAggagaCACCgUCGCCGuGcccgaagaGGACGAa -3'
miRNA:   3'- gUUGCCU-----GUGGgAGCGGC-Ca-------UCUGCU- -5'
1653 5' -56.6 NC_001347.2 + 94960 0.68 0.895272
Target:  5'- aGACGGA-GCCCUCGagcgUGG-AGACGAg -3'
miRNA:   3'- gUUGCCUgUGGGAGCg---GCCaUCUGCU- -5'
1653 5' -56.6 NC_001347.2 + 100198 0.66 0.951537
Target:  5'- -cGCGGccuCGCCCagguaGCCGG-AGACGGc -3'
miRNA:   3'- guUGCCu--GUGGGag---CGGCCaUCUGCU- -5'
1653 5' -56.6 NC_001347.2 + 100754 0.66 0.947513
Target:  5'- aAGCGGGCGUCCUCGCCcGUcGAUa- -3'
miRNA:   3'- gUUGCCUGUGGGAGCGGcCAuCUGcu -5'
1653 5' -56.6 NC_001347.2 + 113176 0.66 0.951537
Target:  5'- gAACGcGCGCCCcagcCGCCGGcguGGCGGc -3'
miRNA:   3'- gUUGCcUGUGGGa---GCGGCCau-CUGCU- -5'
1653 5' -56.6 NC_001347.2 + 113232 0.68 0.907467
Target:  5'- uCGGCGGACGCCgCUuuaauaucgcaCGCCGccucAGGCGAa -3'
miRNA:   3'- -GUUGCCUGUGG-GA-----------GCGGCca--UCUGCU- -5'
1653 5' -56.6 NC_001347.2 + 124543 1.08 0.005101
Target:  5'- gCAACGGACACCCUCGCCGGUAGACGAu -3'
miRNA:   3'- -GUUGCCUGUGGGAGCGGCCAUCUGCU- -5'
1653 5' -56.6 NC_001347.2 + 125261 0.69 0.841479
Target:  5'- -cGCGGACGCCgCUuucccccugaacgacCGCCGGUGG-CGu -3'
miRNA:   3'- guUGCCUGUGG-GA---------------GCGGCCAUCuGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.