miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1654 3' -50 NC_001347.2 + 190125 0.66 0.999624
Target:  5'- cGCCccagaAGAGCGGUacgggGCCGCa-ACCGg -3'
miRNA:   3'- -CGG-----UUUCGCCAaaaa-UGGUGggUGGC- -5'
1654 3' -50 NC_001347.2 + 1598 0.66 0.999624
Target:  5'- gGgCGAGGUGGUgcggcugUACCGCUgcaACCGg -3'
miRNA:   3'- -CgGUUUCGCCAaaa----AUGGUGGg--UGGC- -5'
1654 3' -50 NC_001347.2 + 59777 0.66 0.999624
Target:  5'- aCCAGGGUGGguucaUGCUGCCUAUCu -3'
miRNA:   3'- cGGUUUCGCCaaaa-AUGGUGGGUGGc -5'
1654 3' -50 NC_001347.2 + 87590 0.66 0.999624
Target:  5'- gGCCGugagcagaccGCGGUgcacGCCcguGCCCACCa -3'
miRNA:   3'- -CGGUuu--------CGCCAaaaaUGG---UGGGUGGc -5'
1654 3' -50 NC_001347.2 + 195848 0.66 0.999533
Target:  5'- uUCGAGGCGuGcccUUGCCGCCCGauCCGc -3'
miRNA:   3'- cGGUUUCGC-CaaaAAUGGUGGGU--GGC- -5'
1654 3' -50 NC_001347.2 + 8207 0.66 0.999512
Target:  5'- aGCCGGuaggacAGCGGcgcauacCCACgCCGCCGu -3'
miRNA:   3'- -CGGUU------UCGCCaaaaau-GGUG-GGUGGC- -5'
1654 3' -50 NC_001347.2 + 185739 0.66 0.999422
Target:  5'- cGUUGGAcGCGGUUUUcugGCCGCCUuuccacguACCGc -3'
miRNA:   3'- -CGGUUU-CGCCAAAAa--UGGUGGG--------UGGC- -5'
1654 3' -50 NC_001347.2 + 30592 0.66 0.999422
Target:  5'- cGCC-GGGCGGcUUccUGCgGCCgGCCGc -3'
miRNA:   3'- -CGGuUUCGCC-AAaaAUGgUGGgUGGC- -5'
1654 3' -50 NC_001347.2 + 189652 0.66 0.999422
Target:  5'- aGCCucGGCGuccgUUUUGUCGCCCACgGa -3'
miRNA:   3'- -CGGuuUCGCca--AAAAUGGUGGGUGgC- -5'
1654 3' -50 NC_001347.2 + 63884 0.66 0.999422
Target:  5'- --uGAAGCGGUggaaACCAacgcgaCCACCGu -3'
miRNA:   3'- cggUUUCGCCAaaaaUGGUg-----GGUGGC- -5'
1654 3' -50 NC_001347.2 + 139297 0.66 0.999289
Target:  5'- cCCGAGGCGGauc--GCgUGCCUACCGa -3'
miRNA:   3'- cGGUUUCGCCaaaaaUG-GUGGGUGGC- -5'
1654 3' -50 NC_001347.2 + 176658 0.66 0.999289
Target:  5'- aCgAAAGCGcUUUUggGCuCACCCACCu -3'
miRNA:   3'- cGgUUUCGCcAAAAa-UG-GUGGGUGGc -5'
1654 3' -50 NC_001347.2 + 192194 0.66 0.999289
Target:  5'- gGCCGcggcGCGGgcucgGCguCCCGCCGu -3'
miRNA:   3'- -CGGUuu--CGCCaaaaaUGguGGGUGGC- -5'
1654 3' -50 NC_001347.2 + 174464 0.66 0.99913
Target:  5'- gGCCAAA-CGGUUgguucuUCACCUACUGc -3'
miRNA:   3'- -CGGUUUcGCCAAaaau--GGUGGGUGGC- -5'
1654 3' -50 NC_001347.2 + 58828 0.66 0.99913
Target:  5'- aGUCGAAacccGCGGUgc-UACCGCgucuuccccuuCCACCGg -3'
miRNA:   3'- -CGGUUU----CGCCAaaaAUGGUG-----------GGUGGC- -5'
1654 3' -50 NC_001347.2 + 80958 0.66 0.99913
Target:  5'- cCCGugGAGCGGac--UACCACCggCGCCGc -3'
miRNA:   3'- cGGU--UUCGCCaaaaAUGGUGG--GUGGC- -5'
1654 3' -50 NC_001347.2 + 189915 0.66 0.99913
Target:  5'- cGCCGAcguaucccGCGGUaaccACCguuuACCCACCGu -3'
miRNA:   3'- -CGGUUu-------CGCCAaaaaUGG----UGGGUGGC- -5'
1654 3' -50 NC_001347.2 + 140393 0.66 0.99913
Target:  5'- gGCCuucguGCGGg---UGCgCACCCGCUu -3'
miRNA:   3'- -CGGuuu--CGCCaaaaAUG-GUGGGUGGc -5'
1654 3' -50 NC_001347.2 + 68740 0.66 0.99913
Target:  5'- gGCCGugGAGCGag---UGCCGCCgcaGCCGg -3'
miRNA:   3'- -CGGU--UUCGCcaaaaAUGGUGGg--UGGC- -5'
1654 3' -50 NC_001347.2 + 66711 0.66 0.99913
Target:  5'- uGCCGccGGCuGUUUcUACCACCgcCACCa -3'
miRNA:   3'- -CGGUu-UCGcCAAAaAUGGUGG--GUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.