miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1654 3' -50 NC_001347.2 + 124417 1.11 0.012446
Target:  5'- aGCCAAAGCGGUUUUUACCACCCACCGc -3'
miRNA:   3'- -CGGUUUCGCCAAAAAUGGUGGGUGGC- -5'
1654 3' -50 NC_001347.2 + 109873 0.75 0.87032
Target:  5'- cGCCcaaAAAGCaccgaGGUUga-GCCACCCGCCGc -3'
miRNA:   3'- -CGG---UUUCG-----CCAAaaaUGGUGGGUGGC- -5'
1654 3' -50 NC_001347.2 + 88528 0.74 0.90476
Target:  5'- gGUCAAAGUGGUgacgccGCCGCCgGCCu -3'
miRNA:   3'- -CGGUUUCGCCAaaaa--UGGUGGgUGGc -5'
1654 3' -50 NC_001347.2 + 139467 0.73 0.928033
Target:  5'- cGgCGAGGCGGUgcgcgUGCCguuguACCCGCCu -3'
miRNA:   3'- -CgGUUUCGCCAaaa--AUGG-----UGGGUGGc -5'
1654 3' -50 NC_001347.2 + 184490 0.73 0.938205
Target:  5'- gGCCucGGGCGGcccg-GCCGCCgCGCCGu -3'
miRNA:   3'- -CGGu-UUCGCCaaaaaUGGUGG-GUGGC- -5'
1654 3' -50 NC_001347.2 + 38797 0.72 0.955651
Target:  5'- aGCCGGuugcAGCGGUaca-GCCGCaCCACCu -3'
miRNA:   3'- -CGGUU----UCGCCAaaaaUGGUG-GGUGGc -5'
1654 3' -50 NC_001347.2 + 171519 0.72 0.959425
Target:  5'- gGCCGAcAGCGug---UGCCugCCGCCGu -3'
miRNA:   3'- -CGGUU-UCGCcaaaaAUGGugGGUGGC- -5'
1654 3' -50 NC_001347.2 + 141750 0.72 0.966297
Target:  5'- uGCUAGuccGCGGUUcucgUCGCCCGCCGa -3'
miRNA:   3'- -CGGUUu--CGCCAAaaauGGUGGGUGGC- -5'
1654 3' -50 NC_001347.2 + 59826 0.71 0.969406
Target:  5'- cGCCGugGGGCaGUUUgaGCaGCCCACCGa -3'
miRNA:   3'- -CGGU--UUCGcCAAAaaUGgUGGGUGGC- -5'
1654 3' -50 NC_001347.2 + 134365 0.71 0.969406
Target:  5'- aCCGAGGCGGUgcccGCgACUCGCCc -3'
miRNA:   3'- cGGUUUCGCCAaaaaUGgUGGGUGGc -5'
1654 3' -50 NC_001347.2 + 115171 0.71 0.972305
Target:  5'- uCCGAcGUGGUUgucgUUACCACaacggCCGCCGa -3'
miRNA:   3'- cGGUUuCGCCAAa---AAUGGUG-----GGUGGC- -5'
1654 3' -50 NC_001347.2 + 21442 0.71 0.980681
Target:  5'- aGCUAugcGAGCGGggacgggacgACgACCCACCGc -3'
miRNA:   3'- -CGGU---UUCGCCaaaaa-----UGgUGGGUGGC- -5'
1654 3' -50 NC_001347.2 + 149886 0.7 0.981732
Target:  5'- gGCgCAGGGCGGccguuucUUUUUACaCAgcCCCGCCGu -3'
miRNA:   3'- -CG-GUUUCGCC-------AAAAAUG-GU--GGGUGGC- -5'
1654 3' -50 NC_001347.2 + 170761 0.7 0.983892
Target:  5'- aGCCcGGGCGGcgugUUUUugCGCaUCGCCGu -3'
miRNA:   3'- -CGGuUUCGCCa---AAAAugGUG-GGUGGC- -5'
1654 3' -50 NC_001347.2 + 713 0.7 0.983892
Target:  5'- cGCCAAGGCGGcgcc-AgCACgCGCCGu -3'
miRNA:   3'- -CGGUUUCGCCaaaaaUgGUGgGUGGC- -5'
1654 3' -50 NC_001347.2 + 106269 0.7 0.983892
Target:  5'- aGCCGAcacAGCGGaaaaUGCCGCCgccaaCGCCGa -3'
miRNA:   3'- -CGGUU---UCGCCaaaaAUGGUGG-----GUGGC- -5'
1654 3' -50 NC_001347.2 + 209157 0.7 0.987317
Target:  5'- aGCCAcAGCGGcggcaGCCGaCCACCGc -3'
miRNA:   3'- -CGGUuUCGCCaaaaaUGGUgGGUGGC- -5'
1654 3' -50 NC_001347.2 + 77796 0.7 0.988226
Target:  5'- gGCCGugcAGCGGgccaccgagACaCACCCGCUGg -3'
miRNA:   3'- -CGGUu--UCGCCaaaaa----UG-GUGGGUGGC- -5'
1654 3' -50 NC_001347.2 + 189823 0.7 0.988518
Target:  5'- cGgCAAGGCGGUgguaggucgACCGCCC-UCGg -3'
miRNA:   3'- -CgGUUUCGCCAaaaa-----UGGUGGGuGGC- -5'
1654 3' -50 NC_001347.2 + 78125 0.7 0.988804
Target:  5'- uGUgAAAGUGGUgaccGCCAgCCGCCa -3'
miRNA:   3'- -CGgUUUCGCCAaaaaUGGUgGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.