miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1654 3' -50 NC_001347.2 + 176719 0.66 0.999113
Target:  5'- cUCGGAGCGGguggccUACCaucugaagcugcgACCCGCCa -3'
miRNA:   3'- cGGUUUCGCCaaaa--AUGG-------------UGGGUGGc -5'
1654 3' -50 NC_001347.2 + 168613 0.67 0.999021
Target:  5'- aGCCAAAGUGGUa---GCCcgagcucggcaacgcACCCACg- -3'
miRNA:   3'- -CGGUUUCGCCAaaaaUGG---------------UGGGUGgc -5'
1654 3' -50 NC_001347.2 + 7900 0.67 0.998942
Target:  5'- gGUCAGuGGCGGcgacaagGCCGCCUgaGCCGg -3'
miRNA:   3'- -CGGUU-UCGCCaaaaa--UGGUGGG--UGGC- -5'
1654 3' -50 NC_001347.2 + 2281 0.67 0.998942
Target:  5'- cGCCGuguuCGGg---UACUGCCCGCUGg -3'
miRNA:   3'- -CGGUuuc-GCCaaaaAUGGUGGGUGGC- -5'
1654 3' -50 NC_001347.2 + 157595 0.67 0.998942
Target:  5'- cGCCGucuGCGGcu----CUACCCGCCc -3'
miRNA:   3'- -CGGUuu-CGCCaaaaauGGUGGGUGGc -5'
1654 3' -50 NC_001347.2 + 1918 0.67 0.998942
Target:  5'- cGCUggGcGCGGU----GCUGCCCGCgCGg -3'
miRNA:   3'- -CGGuuU-CGCCAaaaaUGGUGGGUG-GC- -5'
1654 3' -50 NC_001347.2 + 168356 0.67 0.998942
Target:  5'- cGCCGccGCGGUgcc-GCCGCUCugUu -3'
miRNA:   3'- -CGGUuuCGCCAaaaaUGGUGGGugGc -5'
1654 3' -50 NC_001347.2 + 43107 0.67 0.998697
Target:  5'- uGCCGAGGUGGg----GCCACUgcgaucagcggcaUGCCGa -3'
miRNA:   3'- -CGGUUUCGCCaaaaaUGGUGG-------------GUGGC- -5'
1654 3' -50 NC_001347.2 + 196349 0.67 0.998461
Target:  5'- cGCCcuccGCGGUg---GCguCCCACCa -3'
miRNA:   3'- -CGGuuu-CGCCAaaaaUGguGGGUGGc -5'
1654 3' -50 NC_001347.2 + 160336 0.67 0.998461
Target:  5'- uGCCuaAGGGCGGUgugcuUUUUugCggGCCUACCu -3'
miRNA:   3'- -CGG--UUUCGCCA-----AAAAugG--UGGGUGGc -5'
1654 3' -50 NC_001347.2 + 13502 0.67 0.998461
Target:  5'- gGCgCAAcGcCGGg---UGCuCACCCGCCGg -3'
miRNA:   3'- -CG-GUUuC-GCCaaaaAUG-GUGGGUGGC- -5'
1654 3' -50 NC_001347.2 + 197368 0.67 0.998158
Target:  5'- cGCCAgcGCGGUc---GCCACCUggaucuGCCc -3'
miRNA:   3'- -CGGUuuCGCCAaaaaUGGUGGG------UGGc -5'
1654 3' -50 NC_001347.2 + 136264 0.67 0.997807
Target:  5'- gGgCGGAGCGGUaaUUUU-CCA-CCGCCGc -3'
miRNA:   3'- -CgGUUUCGCCA--AAAAuGGUgGGUGGC- -5'
1654 3' -50 NC_001347.2 + 67286 0.67 0.997807
Target:  5'- uCCGAcuGCGGUgg-UGCC-UCCGCCGc -3'
miRNA:   3'- cGGUUu-CGCCAaaaAUGGuGGGUGGC- -5'
1654 3' -50 NC_001347.2 + 136071 0.67 0.997807
Target:  5'- uCCAGGGCGGUggg-ACgGgCCCGCgGa -3'
miRNA:   3'- cGGUUUCGCCAaaaaUGgU-GGGUGgC- -5'
1654 3' -50 NC_001347.2 + 135480 0.67 0.997807
Target:  5'- aGCCGucGCGGUcgaccCCGCUC-CCGg -3'
miRNA:   3'- -CGGUuuCGCCAaaaauGGUGGGuGGC- -5'
1654 3' -50 NC_001347.2 + 113973 0.67 0.99773
Target:  5'- gGUCGuAGCGGgcgagaaaGCCGCCCACg- -3'
miRNA:   3'- -CGGUuUCGCCaaaaa---UGGUGGGUGgc -5'
1654 3' -50 NC_001347.2 + 144283 0.68 0.9974
Target:  5'- -gUggGGuCGGUcUUUGCCGCCC-CCa -3'
miRNA:   3'- cgGuuUC-GCCAaAAAUGGUGGGuGGc -5'
1654 3' -50 NC_001347.2 + 130428 0.68 0.997356
Target:  5'- uGCCGGcggacaacAGCGGggaggagACCAaauucauCCCACCGa -3'
miRNA:   3'- -CGGUU--------UCGCCaaaaa--UGGU-------GGGUGGC- -5'
1654 3' -50 NC_001347.2 + 100871 0.68 0.997312
Target:  5'- aGCCGAGGCGGcgcggcgcAgCGCCgGCCa -3'
miRNA:   3'- -CGGUUUCGCCaaaaa---UgGUGGgUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.