miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1654 3' -50 NC_001347.2 + 713 0.7 0.983892
Target:  5'- cGCCAAGGCGGcgcc-AgCACgCGCCGu -3'
miRNA:   3'- -CGGUUUCGCCaaaaaUgGUGgGUGGC- -5'
1654 3' -50 NC_001347.2 + 1598 0.66 0.999624
Target:  5'- gGgCGAGGUGGUgcggcugUACCGCUgcaACCGg -3'
miRNA:   3'- -CgGUUUCGCCAaaa----AUGGUGGg--UGGC- -5'
1654 3' -50 NC_001347.2 + 1918 0.67 0.998942
Target:  5'- cGCUggGcGCGGU----GCUGCCCGCgCGg -3'
miRNA:   3'- -CGGuuU-CGCCAaaaaUGGUGGGUG-GC- -5'
1654 3' -50 NC_001347.2 + 2281 0.67 0.998942
Target:  5'- cGCCGuguuCGGg---UACUGCCCGCUGg -3'
miRNA:   3'- -CGGUuuc-GCCaaaaAUGGUGGGUGGC- -5'
1654 3' -50 NC_001347.2 + 7900 0.67 0.998942
Target:  5'- gGUCAGuGGCGGcgacaagGCCGCCUgaGCCGg -3'
miRNA:   3'- -CGGUU-UCGCCaaaaa--UGGUGGG--UGGC- -5'
1654 3' -50 NC_001347.2 + 8207 0.66 0.999512
Target:  5'- aGCCGGuaggacAGCGGcgcauacCCACgCCGCCGu -3'
miRNA:   3'- -CGGUU------UCGCCaaaaau-GGUG-GGUGGC- -5'
1654 3' -50 NC_001347.2 + 13502 0.67 0.998461
Target:  5'- gGCgCAAcGcCGGg---UGCuCACCCGCCGg -3'
miRNA:   3'- -CG-GUUuC-GCCaaaaAUG-GUGGGUGGC- -5'
1654 3' -50 NC_001347.2 + 15643 0.69 0.993445
Target:  5'- gGCgCGGAGCGGgugaUUACCGCCCu--- -3'
miRNA:   3'- -CG-GUUUCGCCaaa-AAUGGUGGGuggc -5'
1654 3' -50 NC_001347.2 + 21442 0.71 0.980681
Target:  5'- aGCUAugcGAGCGGggacgggacgACgACCCACCGc -3'
miRNA:   3'- -CGGU---UUCGCCaaaaa-----UGgUGGGUGGC- -5'
1654 3' -50 NC_001347.2 + 27836 0.69 0.993807
Target:  5'- uGCgAAgguGGCGGUggcucguagccACCACCCAUCGu -3'
miRNA:   3'- -CGgUU---UCGCCAaaaa-------UGGUGGGUGGC- -5'
1654 3' -50 NC_001347.2 + 30592 0.66 0.999422
Target:  5'- cGCC-GGGCGGcUUccUGCgGCCgGCCGc -3'
miRNA:   3'- -CGGuUUCGCC-AAaaAUGgUGGgUGGC- -5'
1654 3' -50 NC_001347.2 + 31314 0.68 0.996933
Target:  5'- uCCGAGGuCGGc----ACCGCgCCACCGg -3'
miRNA:   3'- cGGUUUC-GCCaaaaaUGGUG-GGUGGC- -5'
1654 3' -50 NC_001347.2 + 38393 0.69 0.992566
Target:  5'- cGCC--GGCGGccuccgucuccgUGCCGCUCGCCGc -3'
miRNA:   3'- -CGGuuUCGCCaaaa--------AUGGUGGGUGGC- -5'
1654 3' -50 NC_001347.2 + 38797 0.72 0.955651
Target:  5'- aGCCGGuugcAGCGGUaca-GCCGCaCCACCu -3'
miRNA:   3'- -CGGUU----UCGCCAaaaaUGGUG-GGUGGc -5'
1654 3' -50 NC_001347.2 + 43107 0.67 0.998697
Target:  5'- uGCCGAGGUGGg----GCCACUgcgaucagcggcaUGCCGa -3'
miRNA:   3'- -CGGUUUCGCCaaaaaUGGUGG-------------GUGGC- -5'
1654 3' -50 NC_001347.2 + 58828 0.66 0.99913
Target:  5'- aGUCGAAacccGCGGUgc-UACCGCgucuuccccuuCCACCGg -3'
miRNA:   3'- -CGGUUU----CGCCAaaaAUGGUG-----------GGUGGC- -5'
1654 3' -50 NC_001347.2 + 59777 0.66 0.999624
Target:  5'- aCCAGGGUGGguucaUGCUGCCUAUCu -3'
miRNA:   3'- cGGUUUCGCCaaaa-AUGGUGGGUGGc -5'
1654 3' -50 NC_001347.2 + 59826 0.71 0.969406
Target:  5'- cGCCGugGGGCaGUUUgaGCaGCCCACCGa -3'
miRNA:   3'- -CGGU--UUCGcCAAAaaUGgUGGGUGGC- -5'
1654 3' -50 NC_001347.2 + 62746 0.68 0.995791
Target:  5'- cGCCGccccgugacgacGAGCGGcg---GCCGacCCCGCCGu -3'
miRNA:   3'- -CGGU------------UUCGCCaaaaaUGGU--GGGUGGC- -5'
1654 3' -50 NC_001347.2 + 63271 0.68 0.996883
Target:  5'- gGCCAccaacGGCGGUaac-GCCACCUacauuuuGCCGg -3'
miRNA:   3'- -CGGUu----UCGCCAaaaaUGGUGGG-------UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.