miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1655 3' -50.2 NC_001347.2 + 121276 0.66 0.999387
Target:  5'- -uACGCGCuaucGGCcaUCAUCGGCAUCu -3'
miRNA:   3'- gcUGUGCGuu--CCGc-AGUAGUUGUAGu -5'
1655 3' -50.2 NC_001347.2 + 109368 0.66 0.999347
Target:  5'- cCGGCACGacgagggugccgccCAGGGCGaCGaCGACGUCu -3'
miRNA:   3'- -GCUGUGC--------------GUUCCGCaGUaGUUGUAGu -5'
1655 3' -50.2 NC_001347.2 + 78248 0.66 0.999247
Target:  5'- gGACA-GCAAaucGCG-CAUCGGCAUCGa -3'
miRNA:   3'- gCUGUgCGUUc--CGCaGUAGUUGUAGU- -5'
1655 3' -50.2 NC_001347.2 + 126911 0.66 0.99908
Target:  5'- aCGGCACGCAccuggcGGGCuUCuUCGGCAc-- -3'
miRNA:   3'- -GCUGUGCGU------UCCGcAGuAGUUGUagu -5'
1655 3' -50.2 NC_001347.2 + 13146 0.66 0.99908
Target:  5'- gGGCcCGUgcGGCGUUA-CAGCGUCu -3'
miRNA:   3'- gCUGuGCGuuCCGCAGUaGUUGUAGu -5'
1655 3' -50.2 NC_001347.2 + 2140 0.66 0.998883
Target:  5'- gGACGCGCAcgcgguggucgGGGCGgacgCggCAGCAgCAg -3'
miRNA:   3'- gCUGUGCGU-----------UCCGCa---GuaGUUGUaGU- -5'
1655 3' -50.2 NC_001347.2 + 160229 0.66 0.998883
Target:  5'- gGACAC-CGAGGCGUaugucUCGGCGUa- -3'
miRNA:   3'- gCUGUGcGUUCCGCAgu---AGUUGUAgu -5'
1655 3' -50.2 NC_001347.2 + 4576 0.66 0.998651
Target:  5'- cCGGCGgGUAAGGCGUCGgagcccCGAUA-CAu -3'
miRNA:   3'- -GCUGUgCGUUCCGCAGUa-----GUUGUaGU- -5'
1655 3' -50.2 NC_001347.2 + 94317 0.66 0.998651
Target:  5'- uCGcCGCcCAcGGCGUCcUCGGCGUCGu -3'
miRNA:   3'- -GCuGUGcGUuCCGCAGuAGUUGUAGU- -5'
1655 3' -50.2 NC_001347.2 + 187671 0.67 0.998379
Target:  5'- cCGGCACGCcaacacGGCGcUgGUCAACgccGUCAa -3'
miRNA:   3'- -GCUGUGCGuu----CCGC-AgUAGUUG---UAGU- -5'
1655 3' -50.2 NC_001347.2 + 82860 0.67 0.998379
Target:  5'- aCGACcCGCGAGccuguCGUCAUCGGCGc-- -3'
miRNA:   3'- -GCUGuGCGUUCc----GCAGUAGUUGUagu -5'
1655 3' -50.2 NC_001347.2 + 62690 0.67 0.998062
Target:  5'- gGACGgGCAGGaCGUCAaCcACGUCAa -3'
miRNA:   3'- gCUGUgCGUUCcGCAGUaGuUGUAGU- -5'
1655 3' -50.2 NC_001347.2 + 104350 0.67 0.997694
Target:  5'- cCGGCACGCGGccGGCGUagaaCGGCcgCAa -3'
miRNA:   3'- -GCUGUGCGUU--CCGCAgua-GUUGuaGU- -5'
1655 3' -50.2 NC_001347.2 + 15240 0.67 0.996783
Target:  5'- uCGACACcgGCGuuuugAGcGCGagCGUCAACGUCAg -3'
miRNA:   3'- -GCUGUG--CGU-----UC-CGCa-GUAGUUGUAGU- -5'
1655 3' -50.2 NC_001347.2 + 129891 0.67 0.996783
Target:  5'- gGAgACGguGGGCGgcaugCGUCAGCuacucuUCAa -3'
miRNA:   3'- gCUgUGCguUCCGCa----GUAGUUGu-----AGU- -5'
1655 3' -50.2 NC_001347.2 + 158026 0.68 0.994068
Target:  5'- gGACACGC-GGGCGcCGgacagCAggcGCGUCAc -3'
miRNA:   3'- gCUGUGCGuUCCGCaGUa----GU---UGUAGU- -5'
1655 3' -50.2 NC_001347.2 + 87887 0.68 0.994068
Target:  5'- gGAUGCGUAAGGCG-CAagAACAUa- -3'
miRNA:   3'- gCUGUGCGUUCCGCaGUagUUGUAgu -5'
1655 3' -50.2 NC_001347.2 + 195079 0.69 0.992143
Target:  5'- gGACGCGCAuGGCGgCAUUcACGUa- -3'
miRNA:   3'- gCUGUGCGUuCCGCaGUAGuUGUAgu -5'
1655 3' -50.2 NC_001347.2 + 156339 0.69 0.988361
Target:  5'- uGGUGCGCAAauccaauucGGCGUCGgucuUCAACAUCGa -3'
miRNA:   3'- gCUGUGCGUU---------CCGCAGU----AGUUGUAGU- -5'
1655 3' -50.2 NC_001347.2 + 134880 0.69 0.988361
Target:  5'- uCGACACGCcGGGUGggacgGUCGugGUCu -3'
miRNA:   3'- -GCUGUGCGuUCCGCag---UAGUugUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.