Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1655 | 3' | -50.2 | NC_001347.2 | + | 2140 | 0.66 | 0.998883 |
Target: 5'- gGACGCGCAcgcgguggucgGGGCGgacgCggCAGCAgCAg -3' miRNA: 3'- gCUGUGCGU-----------UCCGCa---GuaGUUGUaGU- -5' |
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1655 | 3' | -50.2 | NC_001347.2 | + | 4576 | 0.66 | 0.998651 |
Target: 5'- cCGGCGgGUAAGGCGUCGgagcccCGAUA-CAu -3' miRNA: 3'- -GCUGUgCGUUCCGCAGUa-----GUUGUaGU- -5' |
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1655 | 3' | -50.2 | NC_001347.2 | + | 6325 | 0.76 | 0.827406 |
Target: 5'- aCGGcCGCGCAAGGCGUgAUCAcgccagGCGUUg -3' miRNA: 3'- -GCU-GUGCGUUCCGCAgUAGU------UGUAGu -5' |
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1655 | 3' | -50.2 | NC_001347.2 | + | 13146 | 0.66 | 0.99908 |
Target: 5'- gGGCcCGUgcGGCGUUA-CAGCGUCu -3' miRNA: 3'- gCUGuGCGuuCCGCAGUaGUUGUAGu -5' |
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1655 | 3' | -50.2 | NC_001347.2 | + | 15240 | 0.67 | 0.996783 |
Target: 5'- uCGACACcgGCGuuuugAGcGCGagCGUCAACGUCAg -3' miRNA: 3'- -GCUGUG--CGU-----UC-CGCa-GUAGUUGUAGU- -5' |
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1655 | 3' | -50.2 | NC_001347.2 | + | 52830 | 0.7 | 0.985143 |
Target: 5'- aCGugAC-CGAGGUGUCGUUgcuCAUCAg -3' miRNA: 3'- -GCugUGcGUUCCGCAGUAGuu-GUAGU- -5' |
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1655 | 3' | -50.2 | NC_001347.2 | + | 62690 | 0.67 | 0.998062 |
Target: 5'- gGACGgGCAGGaCGUCAaCcACGUCAa -3' miRNA: 3'- gCUGUgCGUUCcGCAGUaGuUGUAGU- -5' |
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1655 | 3' | -50.2 | NC_001347.2 | + | 77324 | 0.7 | 0.981288 |
Target: 5'- gCGGCguggAUGaCGAGGcCGUCAUCGACAUUu -3' miRNA: 3'- -GCUG----UGC-GUUCC-GCAGUAGUUGUAGu -5' |
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1655 | 3' | -50.2 | NC_001347.2 | + | 78248 | 0.66 | 0.999247 |
Target: 5'- gGACA-GCAAaucGCG-CAUCGGCAUCGa -3' miRNA: 3'- gCUGUgCGUUc--CGCaGUAGUUGUAGU- -5' |
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1655 | 3' | -50.2 | NC_001347.2 | + | 82860 | 0.67 | 0.998379 |
Target: 5'- aCGACcCGCGAGccuguCGUCAUCGGCGc-- -3' miRNA: 3'- -GCUGuGCGUUCc----GCAGUAGUUGUagu -5' |
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1655 | 3' | -50.2 | NC_001347.2 | + | 87887 | 0.68 | 0.994068 |
Target: 5'- gGAUGCGUAAGGCG-CAagAACAUa- -3' miRNA: 3'- gCUGUGCGUUCCGCaGUagUUGUAgu -5' |
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1655 | 3' | -50.2 | NC_001347.2 | + | 94317 | 0.66 | 0.998651 |
Target: 5'- uCGcCGCcCAcGGCGUCcUCGGCGUCGu -3' miRNA: 3'- -GCuGUGcGUuCCGCAGuAGUUGUAGU- -5' |
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1655 | 3' | -50.2 | NC_001347.2 | + | 95101 | 0.69 | 0.986828 |
Target: 5'- aGGCGCcCGAGGCGUCG-CAcaugACGUCu -3' miRNA: 3'- gCUGUGcGUUCCGCAGUaGU----UGUAGu -5' |
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1655 | 3' | -50.2 | NC_001347.2 | + | 99791 | 0.69 | 0.986828 |
Target: 5'- uGugACGCuAGGCGUCGaUAACA-CAg -3' miRNA: 3'- gCugUGCGuUCCGCAGUaGUUGUaGU- -5' |
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1655 | 3' | -50.2 | NC_001347.2 | + | 104350 | 0.67 | 0.997694 |
Target: 5'- cCGGCACGCGGccGGCGUagaaCGGCcgCAa -3' miRNA: 3'- -GCUGUGCGUU--CCGCAgua-GUUGuaGU- -5' |
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1655 | 3' | -50.2 | NC_001347.2 | + | 109368 | 0.66 | 0.999347 |
Target: 5'- cCGGCACGacgagggugccgccCAGGGCGaCGaCGACGUCu -3' miRNA: 3'- -GCUGUGC--------------GUUCCGCaGUaGUUGUAGu -5' |
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1655 | 3' | -50.2 | NC_001347.2 | + | 121079 | 1.1 | 0.013684 |
Target: 5'- aCGACACGCAAGGCGUCAUCAACAUCAu -3' miRNA: 3'- -GCUGUGCGUUCCGCAGUAGUUGUAGU- -5' |
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1655 | 3' | -50.2 | NC_001347.2 | + | 121276 | 0.66 | 0.999387 |
Target: 5'- -uACGCGCuaucGGCcaUCAUCGGCAUCu -3' miRNA: 3'- gcUGUGCGuu--CCGc-AGUAGUUGUAGu -5' |
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1655 | 3' | -50.2 | NC_001347.2 | + | 126911 | 0.66 | 0.99908 |
Target: 5'- aCGGCACGCAccuggcGGGCuUCuUCGGCAc-- -3' miRNA: 3'- -GCUGUGCGU------UCCGcAGuAGUUGUagu -5' |
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1655 | 3' | -50.2 | NC_001347.2 | + | 127073 | 0.7 | 0.9833 |
Target: 5'- cCGGCACGCuaacGCGUUAcucgCAACGUCGc -3' miRNA: 3'- -GCUGUGCGuuc-CGCAGUa---GUUGUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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