miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1655 5' -51.4 NC_001347.2 + 28625 0.66 0.998941
Target:  5'- uGCuACaCGGACGGCGaCCUgcugCGCa -3'
miRNA:   3'- gUGcUGaGCCUGCUGCaGGAaaa-GCG- -5'
1655 5' -51.4 NC_001347.2 + 125850 0.66 0.998725
Target:  5'- gCGCGACgauGACGcuCGUUCUgUUCGCa -3'
miRNA:   3'- -GUGCUGagcCUGCu-GCAGGAaAAGCG- -5'
1655 5' -51.4 NC_001347.2 + 17655 0.66 0.998473
Target:  5'- cCGCGAUUCGucUGACGcugcUCCUauauuaagcUUUCGCg -3'
miRNA:   3'- -GUGCUGAGCcuGCUGC----AGGA---------AAAGCG- -5'
1655 5' -51.4 NC_001347.2 + 75237 0.66 0.998473
Target:  5'- -uCGGCgucCGuGAUGGCGUCCgagUCGUc -3'
miRNA:   3'- guGCUGa--GC-CUGCUGCAGGaaaAGCG- -5'
1655 5' -51.4 NC_001347.2 + 90221 0.66 0.998473
Target:  5'- gACGGCgUGG-CGGCGUCgUUUUUCGg -3'
miRNA:   3'- gUGCUGaGCCuGCUGCAG-GAAAAGCg -5'
1655 5' -51.4 NC_001347.2 + 54706 0.66 0.998473
Target:  5'- -gUGACUUGGGCGAU-UCUgugugUCGCa -3'
miRNA:   3'- guGCUGAGCCUGCUGcAGGaaa--AGCG- -5'
1655 5' -51.4 NC_001347.2 + 88603 0.66 0.99818
Target:  5'- gGCGACcugagCGG-CGGCGgCCUg--CGCg -3'
miRNA:   3'- gUGCUGa----GCCuGCUGCaGGAaaaGCG- -5'
1655 5' -51.4 NC_001347.2 + 208032 0.66 0.99818
Target:  5'- gGCGAUg-GGAcCGACGUCggagUCGCg -3'
miRNA:   3'- gUGCUGagCCU-GCUGCAGgaaaAGCG- -5'
1655 5' -51.4 NC_001347.2 + 140816 0.66 0.99818
Target:  5'- aGCGACUUuGugGcCGUCUUUUcggCGCu -3'
miRNA:   3'- gUGCUGAGcCugCuGCAGGAAAa--GCG- -5'
1655 5' -51.4 NC_001347.2 + 192196 0.66 0.997841
Target:  5'- cCGCGGCgCGGGCucGGCGUCC----CGCc -3'
miRNA:   3'- -GUGCUGaGCCUG--CUGCAGGaaaaGCG- -5'
1655 5' -51.4 NC_001347.2 + 165579 0.67 0.997451
Target:  5'- cCGCGACUCcaGGCGGCGcggCaCUUcgUCGCc -3'
miRNA:   3'- -GUGCUGAGc-CUGCUGCa--G-GAAa-AGCG- -5'
1655 5' -51.4 NC_001347.2 + 173542 0.67 0.997451
Target:  5'- gGCGGCggCGGugGugGcggcagCCUcucUUCGCu -3'
miRNA:   3'- gUGCUGa-GCCugCugCa-----GGAa--AAGCG- -5'
1655 5' -51.4 NC_001347.2 + 182486 0.67 0.997004
Target:  5'- gACGACgaagacgCGGACGACGaagaagCCgcgUCGg -3'
miRNA:   3'- gUGCUGa------GCCUGCUGCa-----GGaaaAGCg -5'
1655 5' -51.4 NC_001347.2 + 189442 0.67 0.997004
Target:  5'- aGCGAgUCGcGACGccgcacGCGUCCgcccgagCGCa -3'
miRNA:   3'- gUGCUgAGC-CUGC------UGCAGGaaaa---GCG- -5'
1655 5' -51.4 NC_001347.2 + 160926 0.67 0.996494
Target:  5'- aACGugUgGuGACGACGUUCUUgaguccucCGCc -3'
miRNA:   3'- gUGCugAgC-CUGCUGCAGGAAaa------GCG- -5'
1655 5' -51.4 NC_001347.2 + 172433 0.67 0.996494
Target:  5'- cUAUGACUCGGGgaUGACGcCCgacgUGCu -3'
miRNA:   3'- -GUGCUGAGCCU--GCUGCaGGaaaaGCG- -5'
1655 5' -51.4 NC_001347.2 + 185470 0.67 0.995914
Target:  5'- uGCG-C-CGGACGGCGUUgUgg-CGCg -3'
miRNA:   3'- gUGCuGaGCCUGCUGCAGgAaaaGCG- -5'
1655 5' -51.4 NC_001347.2 + 142430 0.67 0.995914
Target:  5'- -gUGGCgUCGGcGCGGCGUCCggcgUCGg -3'
miRNA:   3'- guGCUG-AGCC-UGCUGCAGGaaa-AGCg -5'
1655 5' -51.4 NC_001347.2 + 30585 0.67 0.995259
Target:  5'- gACGACgcgcCGGGCGGCuUCCUgcggccggcCGCg -3'
miRNA:   3'- gUGCUGa---GCCUGCUGcAGGAaaa------GCG- -5'
1655 5' -51.4 NC_001347.2 + 188977 0.68 0.99369
Target:  5'- cCugGGCUCcGACGGCG-CCg--UUGCc -3'
miRNA:   3'- -GugCUGAGcCUGCUGCaGGaaaAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.