miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1655 5' -51.4 NC_001347.2 + 1979 0.76 0.815558
Target:  5'- gGCGGCggGGACGACGUCCcgccaGCg -3'
miRNA:   3'- gUGCUGagCCUGCUGCAGGaaaagCG- -5'
1655 5' -51.4 NC_001347.2 + 4339 0.73 0.904589
Target:  5'- aACGACU-GGACGACGUCgUUUaCGa -3'
miRNA:   3'- gUGCUGAgCCUGCUGCAGgAAAaGCg -5'
1655 5' -51.4 NC_001347.2 + 9123 0.69 0.982877
Target:  5'- aGCGugUCGGAaGAUGUCuCUcUUCGa -3'
miRNA:   3'- gUGCugAGCCUgCUGCAG-GAaAAGCg -5'
1655 5' -51.4 NC_001347.2 + 12148 0.77 0.752173
Target:  5'- gAgGACUCGGACGAUGacgaCUUUUUCGUg -3'
miRNA:   3'- gUgCUGAGCCUGCUGCa---GGAAAAGCG- -5'
1655 5' -51.4 NC_001347.2 + 17655 0.66 0.998473
Target:  5'- cCGCGAUUCGucUGACGcugcUCCUauauuaagcUUUCGCg -3'
miRNA:   3'- -GUGCUGAGCcuGCUGC----AGGA---------AAAGCG- -5'
1655 5' -51.4 NC_001347.2 + 28625 0.66 0.998941
Target:  5'- uGCuACaCGGACGGCGaCCUgcugCGCa -3'
miRNA:   3'- gUGcUGaGCCUGCUGCaGGAaaa-GCG- -5'
1655 5' -51.4 NC_001347.2 + 30585 0.67 0.995259
Target:  5'- gACGACgcgcCGGGCGGCuUCCUgcggccggcCGCg -3'
miRNA:   3'- gUGCUGa---GCCUGCUGcAGGAaaa------GCG- -5'
1655 5' -51.4 NC_001347.2 + 36398 0.73 0.922008
Target:  5'- aGCGGCUCGGGCuGGCGUgCUguUUUcCGUg -3'
miRNA:   3'- gUGCUGAGCCUG-CUGCAgGA--AAA-GCG- -5'
1655 5' -51.4 NC_001347.2 + 36937 0.69 0.984709
Target:  5'- aCACGACUCGGAagaACGggCU--UCGCa -3'
miRNA:   3'- -GUGCUGAGCCUgc-UGCagGAaaAGCG- -5'
1655 5' -51.4 NC_001347.2 + 38015 0.7 0.971158
Target:  5'- gCGCGGcCUCGG-CGGCGggcgCCgacUCGCg -3'
miRNA:   3'- -GUGCU-GAGCCuGCUGCa---GGaaaAGCG- -5'
1655 5' -51.4 NC_001347.2 + 41349 0.72 0.932461
Target:  5'- aCACGAUUCcgaGGACGGCGUCuCUgucUgGCg -3'
miRNA:   3'- -GUGCUGAG---CCUGCUGCAG-GAaa-AgCG- -5'
1655 5' -51.4 NC_001347.2 + 54706 0.66 0.998473
Target:  5'- -gUGACUUGGGCGAU-UCUgugugUCGCa -3'
miRNA:   3'- guGCUGAGCCUGCUGcAGGaaa--AGCG- -5'
1655 5' -51.4 NC_001347.2 + 75237 0.66 0.998473
Target:  5'- -uCGGCgucCGuGAUGGCGUCCgagUCGUc -3'
miRNA:   3'- guGCUGa--GC-CUGCUGCAGGaaaAGCG- -5'
1655 5' -51.4 NC_001347.2 + 88603 0.66 0.99818
Target:  5'- gGCGACcugagCGG-CGGCGgCCUg--CGCg -3'
miRNA:   3'- gUGCUGa----GCCuGCUGCaGGAaaaGCG- -5'
1655 5' -51.4 NC_001347.2 + 88638 0.72 0.93734
Target:  5'- cCGCGGCUUGaGCGGCGgCCUg--CGCa -3'
miRNA:   3'- -GUGCUGAGCcUGCUGCaGGAaaaGCG- -5'
1655 5' -51.4 NC_001347.2 + 90221 0.66 0.998473
Target:  5'- gACGGCgUGG-CGGCGUCgUUUUUCGg -3'
miRNA:   3'- gUGCUGaGCCuGCUGCAG-GAAAAGCg -5'
1655 5' -51.4 NC_001347.2 + 121113 1.11 0.01109
Target:  5'- gCACGACUCGGACGACGUCCUUUUCGCc -3'
miRNA:   3'- -GUGCUGAGCCUGCUGCAGGAAAAGCG- -5'
1655 5' -51.4 NC_001347.2 + 125850 0.66 0.998725
Target:  5'- gCGCGACgauGACGcuCGUUCUgUUCGCa -3'
miRNA:   3'- -GUGCUGagcCUGCu-GCAGGAaAAGCG- -5'
1655 5' -51.4 NC_001347.2 + 127414 0.7 0.97827
Target:  5'- uUACGGCUgCGcGACGGCGUCUccggucuggCGCg -3'
miRNA:   3'- -GUGCUGA-GC-CUGCUGCAGGaaaa-----GCG- -5'
1655 5' -51.4 NC_001347.2 + 140816 0.66 0.99818
Target:  5'- aGCGACUUuGugGcCGUCUUUUcggCGCu -3'
miRNA:   3'- gUGCUGAGcCugCuGCAGGAAAa--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.