Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16557 | 3' | -53.6 | NC_004112.1 | + | 2750 | 0.67 | 0.636343 |
Target: 5'- aAGCGGCugucGGCUuaucaguggaaauuuCCCAUGAUGGUCAAUg -3' miRNA: 3'- -UUGCCG----UUGG---------------GGGUGUUACCAGUUGu -5' |
|||||||
16557 | 3' | -53.6 | NC_004112.1 | + | 37811 | 0.68 | 0.585823 |
Target: 5'- gGACGGCAugCCCaagucaccuaGCuAUGG-CAACAa -3' miRNA: 3'- -UUGCCGUugGGGg---------UGuUACCaGUUGU- -5' |
|||||||
16557 | 3' | -53.6 | NC_004112.1 | + | 1162 | 0.7 | 0.454234 |
Target: 5'- cGAUGGCuaugAACCCCacguuGCGGUGGUUGACGa -3' miRNA: 3'- -UUGCCG----UUGGGGg----UGUUACCAGUUGU- -5' |
|||||||
16557 | 3' | -53.6 | NC_004112.1 | + | 18996 | 1.07 | 0.001315 |
Target: 5'- cAACGGCAACCCCCACAAUGGUCAACAg -3' miRNA: 3'- -UUGCCGUUGGGGGUGUUACCAGUUGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home