miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1656 3' -59 NC_001347.2 + 2406 0.66 0.883643
Target:  5'- aGGCCGcGCGGcggcugcuGCCCgagCUGGACcGCg- -3'
miRNA:   3'- aCCGGUuUGCU--------CGGGa--GACCUG-CGgc -5'
1656 3' -59 NC_001347.2 + 183626 0.66 0.883643
Target:  5'- aGaGCC-GAUGAGCCCUCUaaGCaGCCGc -3'
miRNA:   3'- aC-CGGuUUGCUCGGGAGAccUG-CGGC- -5'
1656 3' -59 NC_001347.2 + 106293 0.66 0.883643
Target:  5'- -cGCCAAcgcCGAGCUCUgUcGGCGCCGc -3'
miRNA:   3'- acCGGUUu--GCUCGGGAgAcCUGCGGC- -5'
1656 3' -59 NC_001347.2 + 76705 0.66 0.87689
Target:  5'- cGGCCAGuagGCGAGCagaucguugaUCUGcaGGCGCUGg -3'
miRNA:   3'- aCCGGUU---UGCUCGgg--------AGAC--CUGCGGC- -5'
1656 3' -59 NC_001347.2 + 156806 0.66 0.87689
Target:  5'- cGGCagcGGCGGGCCa---GGACGUCGg -3'
miRNA:   3'- aCCGgu-UUGCUCGGgagaCCUGCGGC- -5'
1656 3' -59 NC_001347.2 + 130020 0.66 0.869937
Target:  5'- cGGUCAAAUGAGCgC-CUGGcuACGCg- -3'
miRNA:   3'- aCCGGUUUGCUCGgGaGACC--UGCGgc -5'
1656 3' -59 NC_001347.2 + 123892 0.66 0.869937
Target:  5'- uUGGCUAucacGCGAGCgcaaagugcccaCCUCgcUGGGCGUCa -3'
miRNA:   3'- -ACCGGUu---UGCUCG------------GGAG--ACCUGCGGc -5'
1656 3' -59 NC_001347.2 + 108612 0.66 0.863513
Target:  5'- cGGCCGAGCGcaaacaccgacaccuGCCCguagCUG-ACGCUGu -3'
miRNA:   3'- aCCGGUUUGCu--------------CGGGa---GACcUGCGGC- -5'
1656 3' -59 NC_001347.2 + 113203 0.66 0.862789
Target:  5'- cGGCCugacuGCGGcugucGCCCgaacgCUcggcGGACGCCGc -3'
miRNA:   3'- aCCGGuu---UGCU-----CGGGa----GA----CCUGCGGC- -5'
1656 3' -59 NC_001347.2 + 150785 0.66 0.84793
Target:  5'- gGuGCCGgguGGCGAGuaCCCUgUGGAcccCGCCGa -3'
miRNA:   3'- aC-CGGU---UUGCUC--GGGAgACCU---GCGGC- -5'
1656 3' -59 NC_001347.2 + 1818 0.67 0.840229
Target:  5'- cUGGCgCAGuACGAGCCgUUCgcgucGGCGCCGc -3'
miRNA:   3'- -ACCG-GUU-UGCUCGG-GAGac---CUGCGGC- -5'
1656 3' -59 NC_001347.2 + 93171 0.67 0.832356
Target:  5'- cGGCCcgaaAAGC-AGCuCCUgcgguUUGGGCGCCGa -3'
miRNA:   3'- aCCGG----UUUGcUCG-GGA-----GACCUGCGGC- -5'
1656 3' -59 NC_001347.2 + 65108 0.67 0.824316
Target:  5'- cGGaUCAAuuGCGGGCCCUgCUG-ACGCUGu -3'
miRNA:   3'- aCC-GGUU--UGCUCGGGA-GACcUGCGGC- -5'
1656 3' -59 NC_001347.2 + 88749 0.67 0.824316
Target:  5'- aGGCCGAGCGAGCCCgagaccGAagUGCgGa -3'
miRNA:   3'- aCCGGUUUGCUCGGGagac--CU--GCGgC- -5'
1656 3' -59 NC_001347.2 + 151330 0.67 0.816117
Target:  5'- gUGGCCuGACGccGCaggCUCUGGugGCgCGu -3'
miRNA:   3'- -ACCGGuUUGCu-CGg--GAGACCugCG-GC- -5'
1656 3' -59 NC_001347.2 + 13524 0.67 0.816117
Target:  5'- -cGCCGGGCG-GCCCg--GGcCGCCGu -3'
miRNA:   3'- acCGGUUUGCuCGGGagaCCuGCGGC- -5'
1656 3' -59 NC_001347.2 + 77768 0.67 0.816117
Target:  5'- cGGCCGAGCGGGCgCaaUUUGuACGCgCGg -3'
miRNA:   3'- aCCGGUUUGCUCGgG--AGACcUGCG-GC- -5'
1656 3' -59 NC_001347.2 + 51103 0.67 0.811124
Target:  5'- gUGGCCGgacacGGCGAGaCCgacuuuuacaugaaCUGGACGCUGc -3'
miRNA:   3'- -ACCGGU-----UUGCUCgGGa-------------GACCUGCGGC- -5'
1656 3' -59 NC_001347.2 + 75063 0.68 0.781868
Target:  5'- gUGGCgAAGCGAccGCCCg-UGaGACGCUGc -3'
miRNA:   3'- -ACCGgUUUGCU--CGGGagAC-CUGCGGC- -5'
1656 3' -59 NC_001347.2 + 158149 0.68 0.780985
Target:  5'- cUGuGUCGAcucaaguGCGAGCgCCaUCUGGACGCgCGc -3'
miRNA:   3'- -AC-CGGUU-------UGCUCG-GG-AGACCUGCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.