miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1656 3' -59 NC_001347.2 + 120311 1.09 0.002383
Target:  5'- cUGGCCAAACGAGCCCUCUGGACGCCGg -3'
miRNA:   3'- -ACCGGUUUGCUCGGGAGACCUGCGGC- -5'
1656 3' -59 NC_001347.2 + 200328 0.75 0.368993
Target:  5'- aGGCCAggUGuuGCCCguggUCUGGcCGCCGg -3'
miRNA:   3'- aCCGGUuuGCu-CGGG----AGACCuGCGGC- -5'
1656 3' -59 NC_001347.2 + 89543 0.74 0.44282
Target:  5'- cGGCCAGGCGGGCaCCUC---GCGCCc -3'
miRNA:   3'- aCCGGUUUGCUCG-GGAGaccUGCGGc -5'
1656 3' -59 NC_001347.2 + 125228 0.71 0.600084
Target:  5'- aGGCCGAcacgGCGGcaaccguuuccccGUCCUCgcGGACGCCGc -3'
miRNA:   3'- aCCGGUU----UGCU-------------CGGGAGa-CCUGCGGC- -5'
1656 3' -59 NC_001347.2 + 44368 0.71 0.610812
Target:  5'- cGGCCGAuucgcccgcCGGGgCUUCUGGAgaaCGCCGg -3'
miRNA:   3'- aCCGGUUu--------GCUCgGGAGACCU---GCGGC- -5'
1656 3' -59 NC_001347.2 + 136078 0.7 0.649903
Target:  5'- cGGUgGGACGGGCCCgc-GGACGgaCCGg -3'
miRNA:   3'- aCCGgUUUGCUCGGGagaCCUGC--GGC- -5'
1656 3' -59 NC_001347.2 + 181223 0.7 0.6694
Target:  5'- cGGCU--ACGAcCCCgccaUGGACGCCGu -3'
miRNA:   3'- aCCGGuuUGCUcGGGag--ACCUGCGGC- -5'
1656 3' -59 NC_001347.2 + 149686 0.7 0.688786
Target:  5'- cGGgCAggUGGGCCCgacgUGGACGUCu -3'
miRNA:   3'- aCCgGUuuGCUCGGGag--ACCUGCGGc -5'
1656 3' -59 NC_001347.2 + 40596 0.69 0.698419
Target:  5'- gGGUUuu-CGAGCgUUCUGGcCGCCGg -3'
miRNA:   3'- aCCGGuuuGCUCGgGAGACCuGCGGC- -5'
1656 3' -59 NC_001347.2 + 77871 0.69 0.708
Target:  5'- gUGGCC----GAGCgC-CUGGGCGCCGu -3'
miRNA:   3'- -ACCGGuuugCUCGgGaGACCUGCGGC- -5'
1656 3' -59 NC_001347.2 + 39353 0.69 0.708
Target:  5'- cGGCCc-GCGGGguucuaCCCggUGGACGCCGu -3'
miRNA:   3'- aCCGGuuUGCUC------GGGagACCUGCGGC- -5'
1656 3' -59 NC_001347.2 + 106144 0.69 0.708
Target:  5'- aGGCUGAGCcGGCCCUCUcG-CGCCc -3'
miRNA:   3'- aCCGGUUUGcUCGGGAGAcCuGCGGc -5'
1656 3' -59 NC_001347.2 + 75996 0.69 0.72698
Target:  5'- cGGCCAGcucGCaGAGCUC-CUGGuACGCgCGg -3'
miRNA:   3'- aCCGGUU---UG-CUCGGGaGACC-UGCG-GC- -5'
1656 3' -59 NC_001347.2 + 148261 0.69 0.736362
Target:  5'- cUGGCCcu---GGCCCgUCUGGACGCa- -3'
miRNA:   3'- -ACCGGuuugcUCGGG-AGACCUGCGgc -5'
1656 3' -59 NC_001347.2 + 65963 0.69 0.736362
Target:  5'- cGGCCu--CGGGUUgcCUGGACGCCu -3'
miRNA:   3'- aCCGGuuuGCUCGGgaGACCUGCGGc -5'
1656 3' -59 NC_001347.2 + 31686 0.68 0.745661
Target:  5'- gGGCCGucgcggacgaaaGugGGGCCgUCUGcACGCCc -3'
miRNA:   3'- aCCGGU------------UugCUCGGgAGACcUGCGGc -5'
1656 3' -59 NC_001347.2 + 4648 0.68 0.754869
Target:  5'- -cGCCAAGCGAagGuCCCUCUGGcucggucCGCCu -3'
miRNA:   3'- acCGGUUUGCU--C-GGGAGACCu------GCGGc -5'
1656 3' -59 NC_001347.2 + 158149 0.68 0.780985
Target:  5'- cUGuGUCGAcucaaguGCGAGCgCCaUCUGGACGCgCGc -3'
miRNA:   3'- -AC-CGGUU-------UGCUCG-GG-AGACCUGCG-GC- -5'
1656 3' -59 NC_001347.2 + 75063 0.68 0.781868
Target:  5'- gUGGCgAAGCGAccGCCCg-UGaGACGCUGc -3'
miRNA:   3'- -ACCGgUUUGCU--CGGGagAC-CUGCGGC- -5'
1656 3' -59 NC_001347.2 + 51103 0.67 0.811124
Target:  5'- gUGGCCGgacacGGCGAGaCCgacuuuuacaugaaCUGGACGCUGc -3'
miRNA:   3'- -ACCGGU-----UUGCUCgGGa-------------GACCUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.