miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1656 3' -59 NC_001347.2 + 1818 0.67 0.840229
Target:  5'- cUGGCgCAGuACGAGCCgUUCgcgucGGCGCCGc -3'
miRNA:   3'- -ACCG-GUU-UGCUCGG-GAGac---CUGCGGC- -5'
1656 3' -59 NC_001347.2 + 2406 0.66 0.883643
Target:  5'- aGGCCGcGCGGcggcugcuGCCCgagCUGGACcGCg- -3'
miRNA:   3'- aCCGGUuUGCU--------CGGGa--GACCUG-CGgc -5'
1656 3' -59 NC_001347.2 + 4648 0.68 0.754869
Target:  5'- -cGCCAAGCGAagGuCCCUCUGGcucggucCGCCu -3'
miRNA:   3'- acCGGUUUGCU--C-GGGAGACCu------GCGGc -5'
1656 3' -59 NC_001347.2 + 13524 0.67 0.816117
Target:  5'- -cGCCGGGCG-GCCCg--GGcCGCCGu -3'
miRNA:   3'- acCGGUUUGCuCGGGagaCCuGCGGC- -5'
1656 3' -59 NC_001347.2 + 31686 0.68 0.745661
Target:  5'- gGGCCGucgcggacgaaaGugGGGCCgUCUGcACGCCc -3'
miRNA:   3'- aCCGGU------------UugCUCGGgAGACcUGCGGc -5'
1656 3' -59 NC_001347.2 + 39353 0.69 0.708
Target:  5'- cGGCCc-GCGGGguucuaCCCggUGGACGCCGu -3'
miRNA:   3'- aCCGGuuUGCUC------GGGagACCUGCGGC- -5'
1656 3' -59 NC_001347.2 + 40596 0.69 0.698419
Target:  5'- gGGUUuu-CGAGCgUUCUGGcCGCCGg -3'
miRNA:   3'- aCCGGuuuGCUCGgGAGACCuGCGGC- -5'
1656 3' -59 NC_001347.2 + 44368 0.71 0.610812
Target:  5'- cGGCCGAuucgcccgcCGGGgCUUCUGGAgaaCGCCGg -3'
miRNA:   3'- aCCGGUUu--------GCUCgGGAGACCU---GCGGC- -5'
1656 3' -59 NC_001347.2 + 51103 0.67 0.811124
Target:  5'- gUGGCCGgacacGGCGAGaCCgacuuuuacaugaaCUGGACGCUGc -3'
miRNA:   3'- -ACCGGU-----UUGCUCgGGa-------------GACCUGCGGC- -5'
1656 3' -59 NC_001347.2 + 65108 0.67 0.824316
Target:  5'- cGGaUCAAuuGCGGGCCCUgCUG-ACGCUGu -3'
miRNA:   3'- aCC-GGUU--UGCUCGGGA-GACcUGCGGC- -5'
1656 3' -59 NC_001347.2 + 65963 0.69 0.736362
Target:  5'- cGGCCu--CGGGUUgcCUGGACGCCu -3'
miRNA:   3'- aCCGGuuuGCUCGGgaGACCUGCGGc -5'
1656 3' -59 NC_001347.2 + 75063 0.68 0.781868
Target:  5'- gUGGCgAAGCGAccGCCCg-UGaGACGCUGc -3'
miRNA:   3'- -ACCGgUUUGCU--CGGGagAC-CUGCGGC- -5'
1656 3' -59 NC_001347.2 + 75996 0.69 0.72698
Target:  5'- cGGCCAGcucGCaGAGCUC-CUGGuACGCgCGg -3'
miRNA:   3'- aCCGGUU---UG-CUCGGGaGACC-UGCG-GC- -5'
1656 3' -59 NC_001347.2 + 76705 0.66 0.87689
Target:  5'- cGGCCAGuagGCGAGCagaucguugaUCUGcaGGCGCUGg -3'
miRNA:   3'- aCCGGUU---UGCUCGgg--------AGAC--CUGCGGC- -5'
1656 3' -59 NC_001347.2 + 77768 0.67 0.816117
Target:  5'- cGGCCGAGCGGGCgCaaUUUGuACGCgCGg -3'
miRNA:   3'- aCCGGUUUGCUCGgG--AGACcUGCG-GC- -5'
1656 3' -59 NC_001347.2 + 77871 0.69 0.708
Target:  5'- gUGGCC----GAGCgC-CUGGGCGCCGu -3'
miRNA:   3'- -ACCGGuuugCUCGgGaGACCUGCGGC- -5'
1656 3' -59 NC_001347.2 + 88749 0.67 0.824316
Target:  5'- aGGCCGAGCGAGCCCgagaccGAagUGCgGa -3'
miRNA:   3'- aCCGGUUUGCUCGGGagac--CU--GCGgC- -5'
1656 3' -59 NC_001347.2 + 89543 0.74 0.44282
Target:  5'- cGGCCAGGCGGGCaCCUC---GCGCCc -3'
miRNA:   3'- aCCGGUUUGCUCG-GGAGaccUGCGGc -5'
1656 3' -59 NC_001347.2 + 93171 0.67 0.832356
Target:  5'- cGGCCcgaaAAGC-AGCuCCUgcgguUUGGGCGCCGa -3'
miRNA:   3'- aCCGG----UUUGcUCG-GGA-----GACCUGCGGC- -5'
1656 3' -59 NC_001347.2 + 106144 0.69 0.708
Target:  5'- aGGCUGAGCcGGCCCUCUcG-CGCCc -3'
miRNA:   3'- aCCGGUUUGcUCGGGAGAcCuGCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.