miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1656 5' -56.8 NC_001347.2 + 188867 0.66 0.946225
Target:  5'- cGCCGGCGcUGCCAuCCUCacgccgACGCCUg -3'
miRNA:   3'- -UGGCUGUaGUGGUcGGAGca----UGCGGA- -5'
1656 5' -56.8 NC_001347.2 + 194027 0.66 0.946225
Target:  5'- cGCgCGACcUCAggGGCUUCGUGCGCg- -3'
miRNA:   3'- -UG-GCUGuAGUggUCGGAGCAUGCGga -5'
1656 5' -56.8 NC_001347.2 + 16756 0.66 0.943642
Target:  5'- gGCCGACAgccUagaggaacuuuuucgCGCCGGCCUCaugaagguguacGUGCGUCg -3'
miRNA:   3'- -UGGCUGU---A---------------GUGGUCGGAG------------CAUGCGGa -5'
1656 5' -56.8 NC_001347.2 + 14850 0.66 0.941875
Target:  5'- -aUGACAccaCGCCcgaGGgCUCGUACGCCa -3'
miRNA:   3'- ugGCUGUa--GUGG---UCgGAGCAUGCGGa -5'
1656 5' -56.8 NC_001347.2 + 38008 0.66 0.937304
Target:  5'- aGCCG-CcgCG-CGGCCUCGgcggcggGCGCCg -3'
miRNA:   3'- -UGGCuGuaGUgGUCGGAGCa------UGCGGa -5'
1656 5' -56.8 NC_001347.2 + 97443 0.66 0.937304
Target:  5'- gGCgGACAaagaACCAGCucCUCGUgcgaGCGCCg -3'
miRNA:   3'- -UGgCUGUag--UGGUCG--GAGCA----UGCGGa -5'
1656 5' -56.8 NC_001347.2 + 196411 0.66 0.937304
Target:  5'- aACCGACAccugggcgcguuUCACCuGCCggCGaucCGCCa -3'
miRNA:   3'- -UGGCUGU------------AGUGGuCGGa-GCau-GCGGa -5'
1656 5' -56.8 NC_001347.2 + 162965 0.66 0.932508
Target:  5'- uACCGugAgcUUGCCGGCCUCuucuUGCCa -3'
miRNA:   3'- -UGGCugU--AGUGGUCGGAGcau-GCGGa -5'
1656 5' -56.8 NC_001347.2 + 12799 0.66 0.927488
Target:  5'- gGCCGGCGuuuUCACUAcGCCgUGgacgACGCCg -3'
miRNA:   3'- -UGGCUGU---AGUGGU-CGGaGCa---UGCGGa -5'
1656 5' -56.8 NC_001347.2 + 137597 0.66 0.927488
Target:  5'- cACCG-CcUCGCCGGCCaCGggguugAUGCCUg -3'
miRNA:   3'- -UGGCuGuAGUGGUCGGaGCa-----UGCGGA- -5'
1656 5' -56.8 NC_001347.2 + 229278 0.66 0.927488
Target:  5'- cCCGGCAUCGCCGGCggccaGaACGCUc -3'
miRNA:   3'- uGGCUGUAGUGGUCGgag--CaUGCGGa -5'
1656 5' -56.8 NC_001347.2 + 153268 0.66 0.922244
Target:  5'- cGCCGugGUUGuuGGCCgaCGUaGCGCCg -3'
miRNA:   3'- -UGGCugUAGUggUCGGa-GCA-UGCGGa -5'
1656 5' -56.8 NC_001347.2 + 34064 0.67 0.916775
Target:  5'- cGCCGACAa-GCCGGCCcguugUGUAUGCa- -3'
miRNA:   3'- -UGGCUGUagUGGUCGGa----GCAUGCGga -5'
1656 5' -56.8 NC_001347.2 + 17108 0.67 0.916775
Target:  5'- -aCGGCcgCGCCAuGCCggUCGUcCGCCg -3'
miRNA:   3'- ugGCUGuaGUGGU-CGG--AGCAuGCGGa -5'
1656 5' -56.8 NC_001347.2 + 174814 0.67 0.911082
Target:  5'- cGCgCGACcu-GCUGGCCUUGUgGCGCCUg -3'
miRNA:   3'- -UG-GCUGuagUGGUCGGAGCA-UGCGGA- -5'
1656 5' -56.8 NC_001347.2 + 44357 0.67 0.905167
Target:  5'- gACCGACca-GCCGGCCgauUCGccCGCCg -3'
miRNA:   3'- -UGGCUGuagUGGUCGG---AGCauGCGGa -5'
1656 5' -56.8 NC_001347.2 + 199678 0.67 0.905167
Target:  5'- -gCGAC-UUGCCGGCCUUGgguguCGCCg -3'
miRNA:   3'- ugGCUGuAGUGGUCGGAGCau---GCGGa -5'
1656 5' -56.8 NC_001347.2 + 18542 0.67 0.905167
Target:  5'- uGCUGcgagugguACGUCGUCGGCCUCGUGgGCUa -3'
miRNA:   3'- -UGGC--------UGUAGUGGUCGGAGCAUgCGGa -5'
1656 5' -56.8 NC_001347.2 + 222822 0.67 0.899032
Target:  5'- cGCCGcagcuguagcaguuaACGUCGCCGGCCUCcaggaggagaugGCGCUg -3'
miRNA:   3'- -UGGC---------------UGUAGUGGUCGGAGca----------UGCGGa -5'
1656 5' -56.8 NC_001347.2 + 137717 0.67 0.892679
Target:  5'- aGCCGGCGUCGCCAcauUCgauggUGUACGCUc -3'
miRNA:   3'- -UGGCUGUAGUGGUc--GGa----GCAUGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.