Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1656 | 5' | -56.8 | NC_001347.2 | + | 120346 | 1.08 | 0.004625 |
Target: 5'- cACCGACAUCACCAGCCUCGUACGCCUg -3' miRNA: 3'- -UGGCUGUAGUGGUCGGAGCAUGCGGA- -5' |
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1656 | 5' | -56.8 | NC_001347.2 | + | 106836 | 0.74 | 0.57054 |
Target: 5'- aACUGACG-CGCaUGGCCaUCGUGCGCCUa -3' miRNA: 3'- -UGGCUGUaGUG-GUCGG-AGCAUGCGGA- -5' |
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1656 | 5' | -56.8 | NC_001347.2 | + | 69533 | 0.73 | 0.58035 |
Target: 5'- cGCCGGCuUCGCCu-CCUCGgaaGCGCCUa -3' miRNA: 3'- -UGGCUGuAGUGGucGGAGCa--UGCGGA- -5' |
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1656 | 5' | -56.8 | NC_001347.2 | + | 156634 | 0.71 | 0.697894 |
Target: 5'- cGCUGGCggCGCCgcugccgGGCCUCGgcCGCCg -3' miRNA: 3'- -UGGCUGuaGUGG-------UCGGAGCauGCGGa -5' |
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1656 | 5' | -56.8 | NC_001347.2 | + | 201492 | 0.71 | 0.72784 |
Target: 5'- uCCGGCGUCGCUGGCgCUUgGUGCGCg- -3' miRNA: 3'- uGGCUGUAGUGGUCG-GAG-CAUGCGga -5' |
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1656 | 5' | -56.8 | NC_001347.2 | + | 24627 | 0.71 | 0.734507 |
Target: 5'- uCCGACAgcuggugcuauuacUCGCCGGCCUCcugGCGCa- -3' miRNA: 3'- uGGCUGU--------------AGUGGUCGGAGca-UGCGga -5' |
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1656 | 5' | -56.8 | NC_001347.2 | + | 67360 | 0.7 | 0.783458 |
Target: 5'- cGCCGcCGUCGCCGccGCCUCGgACuCCUg -3' miRNA: 3'- -UGGCuGUAGUGGU--CGGAGCaUGcGGA- -5' |
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1656 | 5' | -56.8 | NC_001347.2 | + | 192247 | 0.7 | 0.792329 |
Target: 5'- gUCGGCcUCGCCGGCC-CGagcGCGCCg -3' miRNA: 3'- uGGCUGuAGUGGUCGGaGCa--UGCGGa -5' |
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1656 | 5' | -56.8 | NC_001347.2 | + | 181326 | 0.7 | 0.792329 |
Target: 5'- gGCCGGCGUgA--GGCCaUCGUGCGUCUg -3' miRNA: 3'- -UGGCUGUAgUggUCGG-AGCAUGCGGA- -5' |
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1656 | 5' | -56.8 | NC_001347.2 | + | 38960 | 0.69 | 0.801064 |
Target: 5'- cUCGGgAUgGCCGGCCUUGU-CGCCc -3' miRNA: 3'- uGGCUgUAgUGGUCGGAGCAuGCGGa -5' |
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1656 | 5' | -56.8 | NC_001347.2 | + | 125310 | 0.69 | 0.801064 |
Target: 5'- aACCGucGCAgccgCGCCGGCCUCGagcaugUACGCgCUu -3' miRNA: 3'- -UGGC--UGUa---GUGGUCGGAGC------AUGCG-GA- -5' |
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1656 | 5' | -56.8 | NC_001347.2 | + | 89647 | 0.69 | 0.808803 |
Target: 5'- cGCCGGCGUCAucgacCCGGCCugcugacgcgcUCGUcucgaccgcacaaGCGCCg -3' miRNA: 3'- -UGGCUGUAGU-----GGUCGG-----------AGCA-------------UGCGGa -5' |
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1656 | 5' | -56.8 | NC_001347.2 | + | 109463 | 0.69 | 0.818096 |
Target: 5'- cCCG-CGUCACCGGCggCG-GCGCCa -3' miRNA: 3'- uGGCuGUAGUGGUCGgaGCaUGCGGa -5' |
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1656 | 5' | -56.8 | NC_001347.2 | + | 65458 | 0.69 | 0.825556 |
Target: 5'- uGCCuGCGUCACCAGCUggaccCGccgcuacUACGCCa -3' miRNA: 3'- -UGGcUGUAGUGGUCGGa----GC-------AUGCGGa -5' |
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1656 | 5' | -56.8 | NC_001347.2 | + | 197144 | 0.69 | 0.833689 |
Target: 5'- cGCCGuCGUCGCCgccccggGGcCCUCGgUGCGCUa -3' miRNA: 3'- -UGGCuGUAGUGG-------UC-GGAGC-AUGCGGa -5' |
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1656 | 5' | -56.8 | NC_001347.2 | + | 101824 | 0.69 | 0.834492 |
Target: 5'- aGCC-ACAUCACCaaagaaacGGUCUCG-GCGCCg -3' miRNA: 3'- -UGGcUGUAGUGG--------UCGGAGCaUGCGGa -5' |
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1656 | 5' | -56.8 | NC_001347.2 | + | 107320 | 0.69 | 0.842435 |
Target: 5'- cACCGAgG-CGCCAGCCgacccaguggCGUuuCGCCUg -3' miRNA: 3'- -UGGCUgUaGUGGUCGGa---------GCAu-GCGGA- -5' |
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1656 | 5' | -56.8 | NC_001347.2 | + | 222411 | 0.68 | 0.86443 |
Target: 5'- gGCCGuggagagGCGUCGCCGcGUCUCGUuCGUCg -3' miRNA: 3'- -UGGC-------UGUAGUGGU-CGGAGCAuGCGGa -5' |
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1656 | 5' | -56.8 | NC_001347.2 | + | 88542 | 0.68 | 0.86516 |
Target: 5'- cGCCGc---CGCCGGCCUCGUcgGCCa -3' miRNA: 3'- -UGGCuguaGUGGUCGGAGCAugCGGa -5' |
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1656 | 5' | -56.8 | NC_001347.2 | + | 208040 | 0.68 | 0.86516 |
Target: 5'- gACCGACGUCGgaguCgCGGCgUUCGUugGCGCCg -3' miRNA: 3'- -UGGCUGUAGU----G-GUCG-GAGCA--UGCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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