miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1656 5' -56.8 NC_001347.2 + 38656 0.67 0.892679
Target:  5'- cCCGGCGUCugCAGCgCcaccgUCGUGCcgGCCc -3'
miRNA:   3'- uGGCUGUAGugGUCG-G-----AGCAUG--CGGa -5'
1656 5' -56.8 NC_001347.2 + 95929 0.67 0.886778
Target:  5'- uACCGACugcacaagcccaccuUCAUCAGCCUCaacucgcaaGUGCGCa- -3'
miRNA:   3'- -UGGCUGu--------------AGUGGUCGGAG---------CAUGCGga -5'
1656 5' -56.8 NC_001347.2 + 189887 0.67 0.886111
Target:  5'- uCCGGCAgcaGCCGggccGCCUCGaccACGCCg -3'
miRNA:   3'- uGGCUGUag-UGGU----CGGAGCa--UGCGGa -5'
1656 5' -56.8 NC_001347.2 + 116675 0.67 0.886111
Target:  5'- cGCCGcCGUCGCCA-CCUCcgGCGCUg -3'
miRNA:   3'- -UGGCuGUAGUGGUcGGAGcaUGCGGa -5'
1656 5' -56.8 NC_001347.2 + 38448 0.67 0.886111
Target:  5'- cGCCGucccCGUCGCCGGCCcCGccGCGCa- -3'
miRNA:   3'- -UGGCu---GUAGUGGUCGGaGCa-UGCGga -5'
1656 5' -56.8 NC_001347.2 + 107139 0.68 0.879333
Target:  5'- gGCCG-CGuggacUCACCAGCCguaucUCGgcGCGCCUc -3'
miRNA:   3'- -UGGCuGU-----AGUGGUCGG-----AGCa-UGCGGA- -5'
1656 5' -56.8 NC_001347.2 + 190162 0.68 0.872347
Target:  5'- uGCCGGCAUggggggCGCCAaaacGCCgUCGgACGCCg -3'
miRNA:   3'- -UGGCUGUA------GUGGU----CGG-AGCaUGCGGa -5'
1656 5' -56.8 NC_001347.2 + 208040 0.68 0.86516
Target:  5'- gACCGACGUCGgaguCgCGGCgUUCGUugGCGCCg -3'
miRNA:   3'- -UGGCUGUAGU----G-GUCG-GAGCA--UGCGGa -5'
1656 5' -56.8 NC_001347.2 + 88542 0.68 0.86516
Target:  5'- cGCCGc---CGCCGGCCUCGUcgGCCa -3'
miRNA:   3'- -UGGCuguaGUGGUCGGAGCAugCGGa -5'
1656 5' -56.8 NC_001347.2 + 222411 0.68 0.86443
Target:  5'- gGCCGuggagagGCGUCGCCGcGUCUCGUuCGUCg -3'
miRNA:   3'- -UGGC-------UGUAGUGGU-CGGAGCAuGCGGa -5'
1656 5' -56.8 NC_001347.2 + 107320 0.69 0.842435
Target:  5'- cACCGAgG-CGCCAGCCgacccaguggCGUuuCGCCUg -3'
miRNA:   3'- -UGGCUgUaGUGGUCGGa---------GCAu-GCGGA- -5'
1656 5' -56.8 NC_001347.2 + 101824 0.69 0.834492
Target:  5'- aGCC-ACAUCACCaaagaaacGGUCUCG-GCGCCg -3'
miRNA:   3'- -UGGcUGUAGUGG--------UCGGAGCaUGCGGa -5'
1656 5' -56.8 NC_001347.2 + 197144 0.69 0.833689
Target:  5'- cGCCGuCGUCGCCgccccggGGcCCUCGgUGCGCUa -3'
miRNA:   3'- -UGGCuGUAGUGG-------UC-GGAGC-AUGCGGa -5'
1656 5' -56.8 NC_001347.2 + 65458 0.69 0.825556
Target:  5'- uGCCuGCGUCACCAGCUggaccCGccgcuacUACGCCa -3'
miRNA:   3'- -UGGcUGUAGUGGUCGGa----GC-------AUGCGGa -5'
1656 5' -56.8 NC_001347.2 + 109463 0.69 0.818096
Target:  5'- cCCG-CGUCACCGGCggCG-GCGCCa -3'
miRNA:   3'- uGGCuGUAGUGGUCGgaGCaUGCGGa -5'
1656 5' -56.8 NC_001347.2 + 89647 0.69 0.808803
Target:  5'- cGCCGGCGUCAucgacCCGGCCugcugacgcgcUCGUcucgaccgcacaaGCGCCg -3'
miRNA:   3'- -UGGCUGUAGU-----GGUCGG-----------AGCA-------------UGCGGa -5'
1656 5' -56.8 NC_001347.2 + 38960 0.69 0.801064
Target:  5'- cUCGGgAUgGCCGGCCUUGU-CGCCc -3'
miRNA:   3'- uGGCUgUAgUGGUCGGAGCAuGCGGa -5'
1656 5' -56.8 NC_001347.2 + 125310 0.69 0.801064
Target:  5'- aACCGucGCAgccgCGCCGGCCUCGagcaugUACGCgCUu -3'
miRNA:   3'- -UGGC--UGUa---GUGGUCGGAGC------AUGCG-GA- -5'
1656 5' -56.8 NC_001347.2 + 181326 0.7 0.792329
Target:  5'- gGCCGGCGUgA--GGCCaUCGUGCGUCUg -3'
miRNA:   3'- -UGGCUGUAgUggUCGG-AGCAUGCGGA- -5'
1656 5' -56.8 NC_001347.2 + 192247 0.7 0.792329
Target:  5'- gUCGGCcUCGCCGGCC-CGagcGCGCCg -3'
miRNA:   3'- uGGCUGuAGUGGUCGGaGCa--UGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.