miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1656 5' -56.8 NC_001347.2 + 12799 0.66 0.927488
Target:  5'- gGCCGGCGuuuUCACUAcGCCgUGgacgACGCCg -3'
miRNA:   3'- -UGGCUGU---AGUGGU-CGGaGCa---UGCGGa -5'
1656 5' -56.8 NC_001347.2 + 14850 0.66 0.941875
Target:  5'- -aUGACAccaCGCCcgaGGgCUCGUACGCCa -3'
miRNA:   3'- ugGCUGUa--GUGG---UCgGAGCAUGCGGa -5'
1656 5' -56.8 NC_001347.2 + 16756 0.66 0.943642
Target:  5'- gGCCGACAgccUagaggaacuuuuucgCGCCGGCCUCaugaagguguacGUGCGUCg -3'
miRNA:   3'- -UGGCUGU---A---------------GUGGUCGGAG------------CAUGCGGa -5'
1656 5' -56.8 NC_001347.2 + 17108 0.67 0.916775
Target:  5'- -aCGGCcgCGCCAuGCCggUCGUcCGCCg -3'
miRNA:   3'- ugGCUGuaGUGGU-CGG--AGCAuGCGGa -5'
1656 5' -56.8 NC_001347.2 + 18542 0.67 0.905167
Target:  5'- uGCUGcgagugguACGUCGUCGGCCUCGUGgGCUa -3'
miRNA:   3'- -UGGC--------UGUAGUGGUCGGAGCAUgCGGa -5'
1656 5' -56.8 NC_001347.2 + 24627 0.71 0.734507
Target:  5'- uCCGACAgcuggugcuauuacUCGCCGGCCUCcugGCGCa- -3'
miRNA:   3'- uGGCUGU--------------AGUGGUCGGAGca-UGCGga -5'
1656 5' -56.8 NC_001347.2 + 34064 0.67 0.916775
Target:  5'- cGCCGACAa-GCCGGCCcguugUGUAUGCa- -3'
miRNA:   3'- -UGGCUGUagUGGUCGGa----GCAUGCGga -5'
1656 5' -56.8 NC_001347.2 + 38008 0.66 0.937304
Target:  5'- aGCCG-CcgCG-CGGCCUCGgcggcggGCGCCg -3'
miRNA:   3'- -UGGCuGuaGUgGUCGGAGCa------UGCGGa -5'
1656 5' -56.8 NC_001347.2 + 38448 0.67 0.886111
Target:  5'- cGCCGucccCGUCGCCGGCCcCGccGCGCa- -3'
miRNA:   3'- -UGGCu---GUAGUGGUCGGaGCa-UGCGga -5'
1656 5' -56.8 NC_001347.2 + 38656 0.67 0.892679
Target:  5'- cCCGGCGUCugCAGCgCcaccgUCGUGCcgGCCc -3'
miRNA:   3'- uGGCUGUAGugGUCG-G-----AGCAUG--CGGa -5'
1656 5' -56.8 NC_001347.2 + 38960 0.69 0.801064
Target:  5'- cUCGGgAUgGCCGGCCUUGU-CGCCc -3'
miRNA:   3'- uGGCUgUAgUGGUCGGAGCAuGCGGa -5'
1656 5' -56.8 NC_001347.2 + 44357 0.67 0.905167
Target:  5'- gACCGACca-GCCGGCCgauUCGccCGCCg -3'
miRNA:   3'- -UGGCUGuagUGGUCGG---AGCauGCGGa -5'
1656 5' -56.8 NC_001347.2 + 65458 0.69 0.825556
Target:  5'- uGCCuGCGUCACCAGCUggaccCGccgcuacUACGCCa -3'
miRNA:   3'- -UGGcUGUAGUGGUCGGa----GC-------AUGCGGa -5'
1656 5' -56.8 NC_001347.2 + 67360 0.7 0.783458
Target:  5'- cGCCGcCGUCGCCGccGCCUCGgACuCCUg -3'
miRNA:   3'- -UGGCuGUAGUGGU--CGGAGCaUGcGGA- -5'
1656 5' -56.8 NC_001347.2 + 69533 0.73 0.58035
Target:  5'- cGCCGGCuUCGCCu-CCUCGgaaGCGCCUa -3'
miRNA:   3'- -UGGCUGuAGUGGucGGAGCa--UGCGGA- -5'
1656 5' -56.8 NC_001347.2 + 88542 0.68 0.86516
Target:  5'- cGCCGc---CGCCGGCCUCGUcgGCCa -3'
miRNA:   3'- -UGGCuguaGUGGUCGGAGCAugCGGa -5'
1656 5' -56.8 NC_001347.2 + 89647 0.69 0.808803
Target:  5'- cGCCGGCGUCAucgacCCGGCCugcugacgcgcUCGUcucgaccgcacaaGCGCCg -3'
miRNA:   3'- -UGGCUGUAGU-----GGUCGG-----------AGCA-------------UGCGGa -5'
1656 5' -56.8 NC_001347.2 + 95929 0.67 0.886778
Target:  5'- uACCGACugcacaagcccaccuUCAUCAGCCUCaacucgcaaGUGCGCa- -3'
miRNA:   3'- -UGGCUGu--------------AGUGGUCGGAG---------CAUGCGga -5'
1656 5' -56.8 NC_001347.2 + 97443 0.66 0.937304
Target:  5'- gGCgGACAaagaACCAGCucCUCGUgcgaGCGCCg -3'
miRNA:   3'- -UGgCUGUag--UGGUCG--GAGCA----UGCGGa -5'
1656 5' -56.8 NC_001347.2 + 101824 0.69 0.834492
Target:  5'- aGCC-ACAUCACCaaagaaacGGUCUCG-GCGCCg -3'
miRNA:   3'- -UGGcUGUAGUGG--------UCGGAGCaUGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.