miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16564 3' -52.8 NC_004117.1 + 77053 0.66 0.981847
Target:  5'- cGCGgcaacgACGUGAgaguagcgaACCUAGCAUuUACGCa -3'
miRNA:   3'- -CGCa-----UGCACUg--------UGGGUCGUGcAUGUG- -5'
16564 3' -52.8 NC_004117.1 + 38304 0.67 0.969227
Target:  5'- cCGUugGUGACGaugcguCCgCAGCACGUuCGu -3'
miRNA:   3'- cGCAugCACUGU------GG-GUCGUGCAuGUg -5'
16564 3' -52.8 NC_004117.1 + 54911 0.67 0.969227
Target:  5'- aCGgacgACGaggaaGACACuCCAGCGCGU-CGCg -3'
miRNA:   3'- cGCa---UGCa----CUGUG-GGUCGUGCAuGUG- -5'
16564 3' -52.8 NC_004117.1 + 49376 0.67 0.968924
Target:  5'- ---cGCG-GACccaacggACCCAGCAUGUACAg -3'
miRNA:   3'- cgcaUGCaCUG-------UGGGUCGUGCAUGUg -5'
16564 3' -52.8 NC_004117.1 + 98470 0.67 0.962746
Target:  5'- gGUGUugaUGAgGCCUAGCAUGUGCGg -3'
miRNA:   3'- -CGCAugcACUgUGGGUCGUGCAUGUg -5'
16564 3' -52.8 NC_004117.1 + 73919 0.68 0.951336
Target:  5'- cGUGUugacaaACuUGACAUCUucuucugugGGCACGUACACg -3'
miRNA:   3'- -CGCA------UGcACUGUGGG---------UCGUGCAUGUG- -5'
16564 3' -52.8 NC_004117.1 + 141172 0.68 0.932796
Target:  5'- uUGUAUGUGACG-CCAGCGuCGUucCACu -3'
miRNA:   3'- cGCAUGCACUGUgGGUCGU-GCAu-GUG- -5'
16564 3' -52.8 NC_004117.1 + 96420 0.69 0.90411
Target:  5'- aUGUGCGUcGACGCggAGC-CGUGCGCg -3'
miRNA:   3'- cGCAUGCA-CUGUGggUCGuGCAUGUG- -5'
16564 3' -52.8 NC_004117.1 + 145236 0.69 0.90411
Target:  5'- cCGgauuCGUGAUACCCgcuGGCAUGUuCACg -3'
miRNA:   3'- cGCau--GCACUGUGGG---UCGUGCAuGUG- -5'
16564 3' -52.8 NC_004117.1 + 9362 0.69 0.90411
Target:  5'- -aGUACGUGACAaa-AGCcACGUACAa -3'
miRNA:   3'- cgCAUGCACUGUgggUCG-UGCAUGUg -5'
16564 3' -52.8 NC_004117.1 + 156424 0.71 0.845962
Target:  5'- uUGUGCGgucGugGCCguCGGCAUGUACGCc -3'
miRNA:   3'- cGCAUGCa--CugUGG--GUCGUGCAUGUG- -5'
16564 3' -52.8 NC_004117.1 + 145041 0.74 0.675444
Target:  5'- gGUGUACGUGaACAUgCCAGCGgGUAuCACg -3'
miRNA:   3'- -CGCAUGCAC-UGUG-GGUCGUgCAU-GUG- -5'
16564 3' -52.8 NC_004117.1 + 16456 1.12 0.004314
Target:  5'- gGCGUACGUGACACCCAGCACGUACACu -3'
miRNA:   3'- -CGCAUGCACUGUGGGUCGUGCAUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.