miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16566 5' -49.7 NC_004117.1 + 19235 1.07 0.013832
Target:  5'- uUGCGCAACACGUACCGACAAGCAAAAu -3'
miRNA:   3'- -ACGCGUUGUGCAUGGCUGUUCGUUUU- -5'
16566 5' -49.7 NC_004117.1 + 78414 0.76 0.697555
Target:  5'- uUGgGCAACGCGU-CCGGCA-GCAAAc -3'
miRNA:   3'- -ACgCGUUGUGCAuGGCUGUuCGUUUu -5'
16566 5' -49.7 NC_004117.1 + 41986 0.73 0.844502
Target:  5'- cGCGCAACACGUuucgcaGCCacuggGACGAGCu--- -3'
miRNA:   3'- aCGCGUUGUGCA------UGG-----CUGUUCGuuuu -5'
16566 5' -49.7 NC_004117.1 + 142093 0.73 0.861126
Target:  5'- -aCGCuucuGACA-GUGCCGACGAGCAAAAc -3'
miRNA:   3'- acGCG----UUGUgCAUGGCUGUUCGUUUU- -5'
16566 5' -49.7 NC_004117.1 + 104433 0.73 0.876822
Target:  5'- -uCGCAGagaGCGUACCGACAGGuCGAu- -3'
miRNA:   3'- acGCGUUg--UGCAUGGCUGUUC-GUUuu -5'
16566 5' -49.7 NC_004117.1 + 80344 0.72 0.882086
Target:  5'- uUGCGCAaauaccauaacaccACACGUGgCGACuugGGCAAAc -3'
miRNA:   3'- -ACGCGU--------------UGUGCAUgGCUGu--UCGUUUu -5'
16566 5' -49.7 NC_004117.1 + 118411 0.71 0.91604
Target:  5'- cGCGCGAucgauucugccaguCGCGUGCCGugGcAGCAu-- -3'
miRNA:   3'- aCGCGUU--------------GUGCAUGGCugU-UCGUuuu -5'
16566 5' -49.7 NC_004117.1 + 151932 0.71 0.923787
Target:  5'- aGUGUGGCACGUAUuCGGCGuguGCAAGAg -3'
miRNA:   3'- aCGCGUUGUGCAUG-GCUGUu--CGUUUU- -5'
16566 5' -49.7 NC_004117.1 + 63647 0.71 0.929438
Target:  5'- cGCGCGGCA-GUugaucGCCGACAAGUg--- -3'
miRNA:   3'- aCGCGUUGUgCA-----UGGCUGUUCGuuuu -5'
16566 5' -49.7 NC_004117.1 + 51122 0.71 0.929438
Target:  5'- uUGUGCAACGCGaACagGAgGAGCGGGAa -3'
miRNA:   3'- -ACGCGUUGUGCaUGg-CUgUUCGUUUU- -5'
16566 5' -49.7 NC_004117.1 + 39485 0.7 0.957761
Target:  5'- aGUGCGA-ACGUGCCGACAcuaaugcucGCAAAAu -3'
miRNA:   3'- aCGCGUUgUGCAUGGCUGUu--------CGUUUU- -5'
16566 5' -49.7 NC_004117.1 + 96896 0.7 0.957761
Target:  5'- cGCGuCAaagcACACGcUACCGAucCGAGCAAAu -3'
miRNA:   3'- aCGC-GU----UGUGC-AUGGCU--GUUCGUUUu -5'
16566 5' -49.7 NC_004117.1 + 42150 0.69 0.97445
Target:  5'- uUGCGCGACAC--AUCGACAuuggugccuAGCAAu- -3'
miRNA:   3'- -ACGCGUUGUGcaUGGCUGU---------UCGUUuu -5'
16566 5' -49.7 NC_004117.1 + 71463 0.69 0.977106
Target:  5'- aUGCGCAugGCGuUGCCGGCc-GUAc-- -3'
miRNA:   3'- -ACGCGUugUGC-AUGGCUGuuCGUuuu -5'
16566 5' -49.7 NC_004117.1 + 14773 0.68 0.979552
Target:  5'- -uCGCuuguuACACaGgggACCGACAAGCAAAGu -3'
miRNA:   3'- acGCGu----UGUG-Ca--UGGCUGUUCGUUUU- -5'
16566 5' -49.7 NC_004117.1 + 34028 0.68 0.979552
Target:  5'- gGCGCAuuACAUuUGCaCGAUAAGCGAc- -3'
miRNA:   3'- aCGCGU--UGUGcAUG-GCUGUUCGUUuu -5'
16566 5' -49.7 NC_004117.1 + 8294 0.68 0.979552
Target:  5'- cGCGCGuguacgauACACGUGCCGAUuacguGCu--- -3'
miRNA:   3'- aCGCGU--------UGUGCAUGGCUGuu---CGuuuu -5'
16566 5' -49.7 NC_004117.1 + 141225 0.68 0.981799
Target:  5'- cGCGCGACACGUuUCG-CA-GCAGu- -3'
miRNA:   3'- aCGCGUUGUGCAuGGCuGUuCGUUuu -5'
16566 5' -49.7 NC_004117.1 + 29734 0.68 0.983856
Target:  5'- uUGUuuuCAACAcCGUaACCGACGAGCAAc- -3'
miRNA:   3'- -ACGc--GUUGU-GCA-UGGCUGUUCGUUuu -5'
16566 5' -49.7 NC_004117.1 + 55231 0.68 0.987435
Target:  5'- cGCGUucacucuACACGgacCCGACGAGCu--- -3'
miRNA:   3'- aCGCGu------UGUGCau-GGCUGUUCGuuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.