miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16567 3' -52.5 NC_004117.1 + 135486 0.67 0.96815
Target:  5'- gAUGCCagGGGCGUACGcCAUGAUgGUg -3'
miRNA:   3'- -UGCGGgaUCCGCAUGUaGUGUUAgCA- -5'
16567 3' -52.5 NC_004117.1 + 99777 0.68 0.930465
Target:  5'- uGCGCaCCUugucGGGUGUACAUCguugACGGUcCGUg -3'
miRNA:   3'- -UGCG-GGA----UCCGCAUGUAG----UGUUA-GCA- -5'
16567 3' -52.5 NC_004117.1 + 29375 0.69 0.91938
Target:  5'- uUGCCgUAGGCGUGCGaaACuguuAUCGUu -3'
miRNA:   3'- uGCGGgAUCCGCAUGUagUGu---UAGCA- -5'
16567 3' -52.5 NC_004117.1 + 58120 0.76 0.593918
Target:  5'- uCGCCC-AGGCGUAgGUCACGuUCGc -3'
miRNA:   3'- uGCGGGaUCCGCAUgUAGUGUuAGCa -5'
16567 3' -52.5 NC_004117.1 + 19479 1.07 0.008321
Target:  5'- gACGCCCUAGGCGUACAUCACAAUCGUu -3'
miRNA:   3'- -UGCGGGAUCCGCAUGUAGUGUUAGCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.