miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16569 3' -51.9 NC_004117.1 + 110741 0.66 0.989799
Target:  5'- ---aGCAUUgucgCGAGCUGCUCG-CUAa -3'
miRNA:   3'- cuagCGUAGa---GCUUGGCGAGCaGAUg -5'
16569 3' -51.9 NC_004117.1 + 30133 0.66 0.988394
Target:  5'- cAUCGCGUaUCGGgauuGCCGCaaGUUUGCa -3'
miRNA:   3'- cUAGCGUAgAGCU----UGGCGagCAGAUG- -5'
16569 3' -51.9 NC_004117.1 + 1153 0.66 0.98327
Target:  5'- uGUUGCAcuUCUUGAACCGCUUuuuugUUACg -3'
miRNA:   3'- cUAGCGU--AGAGCUUGGCGAGca---GAUG- -5'
16569 3' -51.9 NC_004117.1 + 42198 0.68 0.957739
Target:  5'- cGUCGCGUUccaUCGGGCaacaGCUCGUCc-- -3'
miRNA:   3'- cUAGCGUAG---AGCUUGg---CGAGCAGaug -5'
16569 3' -51.9 NC_004117.1 + 125940 0.69 0.925048
Target:  5'- cGAUCGCAUCau--ACCGgUUCGUUUACg -3'
miRNA:   3'- -CUAGCGUAGagcuUGGC-GAGCAGAUG- -5'
16569 3' -51.9 NC_004117.1 + 94953 0.7 0.907292
Target:  5'- aAUUGCAUCUUuaAugUGUUCGUCUGCa -3'
miRNA:   3'- cUAGCGUAGAGc-UugGCGAGCAGAUG- -5'
16569 3' -51.9 NC_004117.1 + 20117 1.1 0.005915
Target:  5'- gGAUCGCAUCUCGAACCGCUCGUCUACg -3'
miRNA:   3'- -CUAGCGUAGAGCUUGGCGAGCAGAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.