miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16571 3' -56.3 NC_004117.1 + 122095 0.66 0.933429
Target:  5'- gUCAUCGUCGUCGucGuCGUCGgugUCGg- -3'
miRNA:   3'- -AGUGGCAGCGGCu-CuGCAGCa--AGCgc -5'
16571 3' -56.3 NC_004117.1 + 41026 0.66 0.928421
Target:  5'- cUugCGUUGCUGGcauugaaugcGugGUCGUUUGCc -3'
miRNA:   3'- aGugGCAGCGGCU----------CugCAGCAAGCGc -5'
16571 3' -56.3 NC_004117.1 + 58914 0.66 0.928421
Target:  5'- uUCAUCGUUGCUGAccgacugcauGGCGaUCGUU-GCGg -3'
miRNA:   3'- -AGUGGCAGCGGCU----------CUGC-AGCAAgCGC- -5'
16571 3' -56.3 NC_004117.1 + 39605 0.67 0.89362
Target:  5'- aUUAUCGUCGUCGu--CGcCGUUCGCc -3'
miRNA:   3'- -AGUGGCAGCGGCucuGCaGCAAGCGc -5'
16571 3' -56.3 NC_004117.1 + 80215 0.68 0.873252
Target:  5'- gCGCCG-CgGCCGAGuCGUUGUcCGCc -3'
miRNA:   3'- aGUGGCaG-CGGCUCuGCAGCAaGCGc -5'
16571 3' -56.3 NC_004117.1 + 71080 0.69 0.827127
Target:  5'- gUUACCGUCaucgcuaaacuGCCGAGugG-CGUgCGCu -3'
miRNA:   3'- -AGUGGCAG-----------CGGCUCugCaGCAaGCGc -5'
16571 3' -56.3 NC_004117.1 + 148403 0.69 0.810331
Target:  5'- --gUCGUCGCCGAGGCaUCGgcaaUGCGa -3'
miRNA:   3'- aguGGCAGCGGCUCUGcAGCaa--GCGC- -5'
16571 3' -56.3 NC_004117.1 + 135972 0.69 0.801699
Target:  5'- cCAUCGUCGCUGAugcGcCGUCGUucugUCGCc -3'
miRNA:   3'- aGUGGCAGCGGCU---CuGCAGCA----AGCGc -5'
16571 3' -56.3 NC_004117.1 + 59260 0.7 0.774958
Target:  5'- aUCACCGUCGCUGuc-CGUCGUU-GUa -3'
miRNA:   3'- -AGUGGCAGCGGCucuGCAGCAAgCGc -5'
16571 3' -56.3 NC_004117.1 + 19373 0.7 0.737645
Target:  5'- uUCGgCGUCGCCGA--CGUUgggGUUCGCGc -3'
miRNA:   3'- -AGUgGCAGCGGCUcuGCAG---CAAGCGC- -5'
16571 3' -56.3 NC_004117.1 + 58127 0.72 0.669308
Target:  5'- uUCACCaUCGCCcAGGCGUaggucaCGUUCGCc -3'
miRNA:   3'- -AGUGGcAGCGGcUCUGCA------GCAAGCGc -5'
16571 3' -56.3 NC_004117.1 + 100696 0.73 0.589603
Target:  5'- uUCACCGUCGUCGu--CGUCGgugUCGUc -3'
miRNA:   3'- -AGUGGCAGCGGCucuGCAGCa--AGCGc -5'
16571 3' -56.3 NC_004117.1 + 94855 0.79 0.318886
Target:  5'- aCGCCGUCGCCGAGguACG-CGUagGCGu -3'
miRNA:   3'- aGUGGCAGCGGCUC--UGCaGCAagCGC- -5'
16571 3' -56.3 NC_004117.1 + 58166 1.09 0.003701
Target:  5'- aUCACCGUCGCCGAGACGUCGUUCGCGu -3'
miRNA:   3'- -AGUGGCAGCGGCUCUGCAGCAAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.