miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16572 3' -51.4 NC_004117.1 + 122099 0.66 0.990516
Target:  5'- -aAGUG-UCAUCGUCGUcGUCguCGUCGg -3'
miRNA:   3'- uaUUACuAGUGGCAGCGaCAG--GCAGC- -5'
16572 3' -51.4 NC_004117.1 + 78648 0.66 0.989185
Target:  5'- -cAGUGGaUACCGUCGUcGUCCGg-- -3'
miRNA:   3'- uaUUACUaGUGGCAGCGaCAGGCagc -5'
16572 3' -51.4 NC_004117.1 + 97841 0.66 0.987712
Target:  5'- uUAAUGA-CAUUGguguuuUCGCUGUUCGUCa -3'
miRNA:   3'- uAUUACUaGUGGC------AGCGACAGGCAGc -5'
16572 3' -51.4 NC_004117.1 + 77793 0.67 0.986089
Target:  5'- aAUAAUGGUCGCgG-CGCgGUCguUGUCGa -3'
miRNA:   3'- -UAUUACUAGUGgCaGCGaCAG--GCAGC- -5'
16572 3' -51.4 NC_004117.1 + 135972 0.67 0.984307
Target:  5'- -------cCAUCGUCGCUGaugcgCCGUCGu -3'
miRNA:   3'- uauuacuaGUGGCAGCGACa----GGCAGC- -5'
16572 3' -51.4 NC_004117.1 + 45154 0.67 0.982356
Target:  5'- gGUAAUGAUgGUCGUCGUaaUGuUCCGUCc -3'
miRNA:   3'- -UAUUACUAgUGGCAGCG--AC-AGGCAGc -5'
16572 3' -51.4 NC_004117.1 + 72576 0.67 0.977916
Target:  5'- -cGGUGG----UGUCGUUGUCCGUCGa -3'
miRNA:   3'- uaUUACUagugGCAGCGACAGGCAGC- -5'
16572 3' -51.4 NC_004117.1 + 29234 0.68 0.9727
Target:  5'- -aGcgGGUCGuuGUCGUUGccccgggCCGUCGa -3'
miRNA:   3'- uaUuaCUAGUggCAGCGACa------GGCAGC- -5'
16572 3' -51.4 NC_004117.1 + 97708 0.68 0.969783
Target:  5'- uUGGUG-UCugUGUCGUUGU-CGUCGg -3'
miRNA:   3'- uAUUACuAGugGCAGCGACAgGCAGC- -5'
16572 3' -51.4 NC_004117.1 + 58168 0.71 0.883726
Target:  5'- ----aGAUCACCGUCGCcGagaCGUCGu -3'
miRNA:   3'- uauuaCUAGUGGCAGCGaCag-GCAGC- -5'
16572 3' -51.4 NC_004117.1 + 59267 1.07 0.011402
Target:  5'- aAUAAUGAUCACCGUCGCUGUCCGUCGu -3'
miRNA:   3'- -UAUUACUAGUGGCAGCGACAGGCAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.