miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16577 5' -55.5 NC_004117.1 + 25844 0.66 0.932246
Target:  5'- aGCuGAUUGUGuagaaGCUGACAuUGCUGCGGu -3'
miRNA:   3'- gCG-CUGGCAUg----UGACUGU-ACGGCGCU- -5'
16577 5' -55.5 NC_004117.1 + 118410 0.67 0.916064
Target:  5'- gCGCGAUCG-AUuCUGccagucGCGUGCCGUGGc -3'
miRNA:   3'- -GCGCUGGCaUGuGAC------UGUACGGCGCU- -5'
16577 5' -55.5 NC_004117.1 + 104105 0.67 0.916064
Target:  5'- gGUGGCCGaugGCGCUuucGACGUGUCGgGc -3'
miRNA:   3'- gCGCUGGCa--UGUGA---CUGUACGGCgCu -5'
16577 5' -55.5 NC_004117.1 + 141026 0.67 0.916064
Target:  5'- aCGUGGgagUCGUGCAggGAC-UGCUGCGAa -3'
miRNA:   3'- -GCGCU---GGCAUGUgaCUGuACGGCGCU- -5'
16577 5' -55.5 NC_004117.1 + 88693 0.67 0.9102
Target:  5'- aGCuGuuCGUugACUGGCAuUGCUGCGu -3'
miRNA:   3'- gCG-CugGCAugUGACUGU-ACGGCGCu -5'
16577 5' -55.5 NC_004117.1 + 30949 0.67 0.891219
Target:  5'- aCGCcGCCGUACACgauCAUGUCGaccaGAa -3'
miRNA:   3'- -GCGcUGGCAUGUGacuGUACGGCg---CU- -5'
16577 5' -55.5 NC_004117.1 + 34357 0.67 0.884438
Target:  5'- aGCGAUCGUGC-CgauggucGGCAUGCCaaugauggGCGAu -3'
miRNA:   3'- gCGCUGGCAUGuGa------CUGUACGG--------CGCU- -5'
16577 5' -55.5 NC_004117.1 + 85010 0.68 0.877437
Target:  5'- gCGCGACCaaaaauacuaGUAgACauaaaaUGGCGauUGCCGCGAu -3'
miRNA:   3'- -GCGCUGG----------CAUgUG------ACUGU--ACGGCGCU- -5'
16577 5' -55.5 NC_004117.1 + 113668 0.68 0.862038
Target:  5'- aGCGACg--ACGCUGguucgaugaaugaACGUGCCGCGc -3'
miRNA:   3'- gCGCUGgcaUGUGAC-------------UGUACGGCGCu -5'
16577 5' -55.5 NC_004117.1 + 70468 0.68 0.85516
Target:  5'- aCGUGACacauuuCGUGCGCUaACGUGUCGaCGAg -3'
miRNA:   3'- -GCGCUG------GCAUGUGAcUGUACGGC-GCU- -5'
16577 5' -55.5 NC_004117.1 + 43578 0.73 0.610106
Target:  5'- uGCGGCCGUGCAagaaucacaaUUGAguUcGCCGCGGu -3'
miRNA:   3'- gCGCUGGCAUGU----------GACUguA-CGGCGCU- -5'
16577 5' -55.5 NC_004117.1 + 147005 1.09 0.003952
Target:  5'- uCGCGACCGUACACUGACAUGCCGCGAc -3'
miRNA:   3'- -GCGCUGGCAUGUGACUGUACGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.