miRNA display CGI


Results 21 - 40 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1658 3' -55.4 NC_001347.2 + 52058 0.67 0.957967
Target:  5'- aCU-GGGACGAGGAGgaggaggcgucCGCGGcccGCGAgCGCa -3'
miRNA:   3'- -GAcCCCUGCUUCUU-----------GCGCC---UGCU-GUG- -5'
1658 3' -55.4 NC_001347.2 + 33762 0.67 0.957967
Target:  5'- -cGGGGcCGuuuGGAACGCGuuucgcuugauaGAaCGACACg -3'
miRNA:   3'- gaCCCCuGCu--UCUUGCGC------------CU-GCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 140673 0.68 0.916775
Target:  5'- -gGGGGaAUGAuGGGGCGCGG-CGGuCGCa -3'
miRNA:   3'- gaCCCC-UGCU-UCUUGCGCCuGCU-GUG- -5'
1658 3' -55.4 NC_001347.2 + 8193 0.68 0.932016
Target:  5'- -cGGGGugGGacgAGAGC-CGGuaggacaGCGGCGCa -3'
miRNA:   3'- gaCCCCugCU---UCUUGcGCC-------UGCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 135767 0.68 0.916775
Target:  5'- -gGGGGAgggGAAGGGCGCGGACc---- -3'
miRNA:   3'- gaCCCCUg--CUUCUUGCGCCUGcugug -5'
1658 3' -55.4 NC_001347.2 + 48499 0.68 0.910501
Target:  5'- -cGGGcacagacGACGAAGAggACGaGGACGACAa -3'
miRNA:   3'- gaCCC-------CUGCUUCU--UGCgCCUGCUGUg -5'
1658 3' -55.4 NC_001347.2 + 157968 0.69 0.885443
Target:  5'- aCUGGGucugcacGACGAGacGCGCGGAgGAgGCu -3'
miRNA:   3'- -GACCC-------CUGCUUcuUGCGCCUgCUgUG- -5'
1658 3' -55.4 NC_001347.2 + 73708 0.69 0.905167
Target:  5'- -aGGGGcCGggGucCGCGGGCaccgccgccggaGGCGCg -3'
miRNA:   3'- gaCCCCuGCuuCuuGCGCCUG------------CUGUG- -5'
1658 3' -55.4 NC_001347.2 + 164904 0.69 0.892679
Target:  5'- -gGGGGAgGAGGAG-GCGGugGcCAg -3'
miRNA:   3'- gaCCCCUgCUUCUUgCGCCugCuGUg -5'
1658 3' -55.4 NC_001347.2 + 228023 0.69 0.905167
Target:  5'- gUGGGGACGGAuucuuGAggcuacaaagauACGCGGAgacguCGugGCg -3'
miRNA:   3'- gACCCCUGCUU-----CU------------UGCGCCU-----GCugUG- -5'
1658 3' -55.4 NC_001347.2 + 67007 0.69 0.890731
Target:  5'- gCUGGGGggccaacgccggcuGCGGAGAcaGCuGCGGcgguccucGCGACGCu -3'
miRNA:   3'- -GACCCC--------------UGCUUCU--UG-CGCC--------UGCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 40672 0.7 0.850197
Target:  5'- -cGGGGACGggGGuuGCGCugGGGcCGGgGCu -3'
miRNA:   3'- gaCCCCUGCuuCU--UGCG--CCU-GCUgUG- -5'
1658 3' -55.4 NC_001347.2 + 135070 0.71 0.792329
Target:  5'- gUGGGGACGGugauuguggaGGGGCGUacuGACGACAa -3'
miRNA:   3'- gACCCCUGCU----------UCUUGCGc--CUGCUGUg -5'
1658 3' -55.4 NC_001347.2 + 30954 0.71 0.801064
Target:  5'- cCUGGGGuaACGAgcGGAGCGCgacccauuucaaGGuCGGCGCa -3'
miRNA:   3'- -GACCCC--UGCU--UCUUGCG------------CCuGCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 192047 0.71 0.801064
Target:  5'- -cGGcGACGAcGGugGCGGcgACGACACg -3'
miRNA:   3'- gaCCcCUGCUuCUugCGCC--UGCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 40098 0.71 0.818096
Target:  5'- -cGGGGGCGAGGGACGaCGGcccugGgGAcCGCg -3'
miRNA:   3'- gaCCCCUGCUUCUUGC-GCC-----UgCU-GUG- -5'
1658 3' -55.4 NC_001347.2 + 95147 0.72 0.737353
Target:  5'- uUGGGGGCGGAGGgaacaggagaaGgGCagGGACGACAg -3'
miRNA:   3'- gACCCCUGCUUCU-----------UgCG--CCUGCUGUg -5'
1658 3' -55.4 NC_001347.2 + 2113 0.72 0.746779
Target:  5'- -cGGGGGCGc-GAuuugcgugccuaACGCGGACGcGCACg -3'
miRNA:   3'- gaCCCCUGCuuCU------------UGCGCCUGC-UGUG- -5'
1658 3' -55.4 NC_001347.2 + 67775 0.72 0.765341
Target:  5'- -aGGGGA-GGAGAgccuacagACG-GGACGACACa -3'
miRNA:   3'- gaCCCCUgCUUCU--------UGCgCCUGCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 88360 0.72 0.736405
Target:  5'- gCUGGcGGCGcugccgcGAGAcgACGUGGACGGCACu -3'
miRNA:   3'- -GACCcCUGC-------UUCU--UGCGCCUGCUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.