Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1658 | 3' | -55.4 | NC_001347.2 | + | 117980 | 1.1 | 0.004625 |
Target: 5'- cCUGGGGACGAAGAACGCGGACGACACg -3' miRNA: 3'- -GACCCCUGCUUCUUGCGCCUGCUGUG- -5' |
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1658 | 3' | -55.4 | NC_001347.2 | + | 39513 | 0.81 | 0.299914 |
Target: 5'- --aGGGGCGggGGGCGCGG-CGACAUg -3' miRNA: 3'- gacCCCUGCuuCUUGCGCCuGCUGUG- -5' |
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1658 | 3' | -55.4 | NC_001347.2 | + | 1972 | 0.76 | 0.560771 |
Target: 5'- -cGGGGACGgcG-GCGgGGACGACGu -3' miRNA: 3'- gaCCCCUGCuuCuUGCgCCUGCUGUg -5' |
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1658 | 3' | -55.4 | NC_001347.2 | + | 113162 | 0.76 | 0.540413 |
Target: 5'- -cGGGGACGAAGAgggaACGCGcgccccagccgccGGCGugGCg -3' miRNA: 3'- gaCCCCUGCUUCU----UGCGC-------------CUGCugUG- -5' |
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1658 | 3' | -55.4 | NC_001347.2 | + | 40729 | 0.75 | 0.60007 |
Target: 5'- uUGGGGACGggGAcaguuugcgGCGCGGACc---- -3' miRNA: 3'- gACCCCUGCuuCU---------UGCGCCUGcugug -5' |
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1658 | 3' | -55.4 | NC_001347.2 | + | 182477 | 0.75 | 0.590196 |
Target: 5'- gCUGaGGacgacGACGAAG-ACGCGGACGACGa -3' miRNA: 3'- -GAC-CC-----CUGCUUCuUGCGCCUGCUGUg -5' |
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1658 | 3' | -55.4 | NC_001347.2 | + | 177647 | 0.75 | 0.58035 |
Target: 5'- -cGGGGA-GGAGAGCGUaacGGAgGACACa -3' miRNA: 3'- gaCCCCUgCUUCUUGCG---CCUgCUGUG- -5' |
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1658 | 3' | -55.4 | NC_001347.2 | + | 112783 | 0.74 | 0.629798 |
Target: 5'- -cGGGGGCGccguAGGACGCGGGauaaGACGg -3' miRNA: 3'- gaCCCCUGCu---UCUUGCGCCUg---CUGUg -5' |
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1658 | 3' | -55.4 | NC_001347.2 | + | 140575 | 0.73 | 0.72784 |
Target: 5'- -cGGGcggcggugcuGGCGggGGugGUGGACGAgACg -3' miRNA: 3'- gaCCC----------CUGCuuCUugCGCCUGCUgUG- -5' |
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1658 | 3' | -55.4 | NC_001347.2 | + | 67775 | 0.72 | 0.765341 |
Target: 5'- -aGGGGA-GGAGAgccuacagACG-GGACGACACa -3' miRNA: 3'- gaCCCCUgCUUCU--------UGCgCCUGCUGUG- -5' |
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1658 | 3' | -55.4 | NC_001347.2 | + | 88360 | 0.72 | 0.736405 |
Target: 5'- gCUGGcGGCGcugccgcGAGAcgACGUGGACGGCACu -3' miRNA: 3'- -GACCcCUGC-------UUCU--UGCGCCUGCUGUG- -5' |
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1658 | 3' | -55.4 | NC_001347.2 | + | 95147 | 0.72 | 0.737353 |
Target: 5'- uUGGGGGCGGAGGgaacaggagaaGgGCagGGACGACAg -3' miRNA: 3'- gACCCCUGCUUCU-----------UgCG--CCUGCUGUg -5' |
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1658 | 3' | -55.4 | NC_001347.2 | + | 2113 | 0.72 | 0.746779 |
Target: 5'- -cGGGGGCGc-GAuuugcgugccuaACGCGGACGcGCACg -3' miRNA: 3'- gaCCCCUGCuuCU------------UGCGCCUGC-UGUG- -5' |
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1658 | 3' | -55.4 | NC_001347.2 | + | 192047 | 0.71 | 0.801064 |
Target: 5'- -cGGcGACGAcGGugGCGGcgACGACACg -3' miRNA: 3'- gaCCcCUGCUuCUugCGCC--UGCUGUG- -5' |
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1658 | 3' | -55.4 | NC_001347.2 | + | 135070 | 0.71 | 0.792329 |
Target: 5'- gUGGGGACGGugauuguggaGGGGCGUacuGACGACAa -3' miRNA: 3'- gACCCCUGCU----------UCUUGCGc--CUGCUGUg -5' |
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1658 | 3' | -55.4 | NC_001347.2 | + | 40098 | 0.71 | 0.818096 |
Target: 5'- -cGGGGGCGAGGGACGaCGGcccugGgGAcCGCg -3' miRNA: 3'- gaCCCCUGCUUCUUGC-GCC-----UgCU-GUG- -5' |
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1658 | 3' | -55.4 | NC_001347.2 | + | 30954 | 0.71 | 0.801064 |
Target: 5'- cCUGGGGuaACGAgcGGAGCGCgacccauuucaaGGuCGGCGCa -3' miRNA: 3'- -GACCCC--UGCU--UCUUGCG------------CCuGCUGUG- -5' |
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1658 | 3' | -55.4 | NC_001347.2 | + | 40672 | 0.7 | 0.850197 |
Target: 5'- -cGGGGACGggGGuuGCGCugGGGcCGGgGCu -3' miRNA: 3'- gaCCCCUGCuuCU--UGCG--CCU-GCUgUG- -5' |
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1658 | 3' | -55.4 | NC_001347.2 | + | 67007 | 0.69 | 0.890731 |
Target: 5'- gCUGGGGggccaacgccggcuGCGGAGAcaGCuGCGGcgguccucGCGACGCu -3' miRNA: 3'- -GACCCC--------------UGCUUCU--UG-CGCC--------UGCUGUG- -5' |
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1658 | 3' | -55.4 | NC_001347.2 | + | 157968 | 0.69 | 0.885443 |
Target: 5'- aCUGGGucugcacGACGAGacGCGCGGAgGAgGCu -3' miRNA: 3'- -GACCC-------CUGCUUcuUGCGCCUgCUgUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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