miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1658 3' -55.4 NC_001347.2 + 164904 0.69 0.892679
Target:  5'- -gGGGGAgGAGGAG-GCGGugGcCAg -3'
miRNA:   3'- gaCCCCUgCUUCUUgCGCCugCuGUg -5'
1658 3' -55.4 NC_001347.2 + 228023 0.69 0.905167
Target:  5'- gUGGGGACGGAuucuuGAggcuacaaagauACGCGGAgacguCGugGCg -3'
miRNA:   3'- gACCCCUGCUU-----CU------------UGCGCCU-----GCugUG- -5'
1658 3' -55.4 NC_001347.2 + 67007 0.69 0.890731
Target:  5'- gCUGGGGggccaacgccggcuGCGGAGAcaGCuGCGGcgguccucGCGACGCu -3'
miRNA:   3'- -GACCCC--------------UGCUUCU--UG-CGCC--------UGCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 135767 0.68 0.916775
Target:  5'- -gGGGGAgggGAAGGGCGCGGACc---- -3'
miRNA:   3'- gaCCCCUg--CUUCUUGCGCCUGcugug -5'
1658 3' -55.4 NC_001347.2 + 8193 0.68 0.932016
Target:  5'- -cGGGGugGGacgAGAGC-CGGuaggacaGCGGCGCa -3'
miRNA:   3'- gaCCCCugCU---UCUUGcGCC-------UGCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 140673 0.68 0.916775
Target:  5'- -gGGGGaAUGAuGGGGCGCGG-CGGuCGCa -3'
miRNA:   3'- gaCCCC-UGCU-UCUUGCGCCuGCU-GUG- -5'
1658 3' -55.4 NC_001347.2 + 48499 0.68 0.910501
Target:  5'- -cGGGcacagacGACGAAGAggACGaGGACGACAa -3'
miRNA:   3'- gaCCC-------CUGCUUCU--UGCgCCUGCUGUg -5'
1658 3' -55.4 NC_001347.2 + 33762 0.67 0.957967
Target:  5'- -cGGGGcCGuuuGGAACGCGuuucgcuugauaGAaCGACACg -3'
miRNA:   3'- gaCCCCuGCu--UCUUGCGC------------CU-GCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 52058 0.67 0.957967
Target:  5'- aCU-GGGACGAGGAGgaggaggcgucCGCGGcccGCGAgCGCa -3'
miRNA:   3'- -GAcCCCUGCUUCUU-----------GCGCC---UGCU-GUG- -5'
1658 3' -55.4 NC_001347.2 + 17221 0.67 0.953117
Target:  5'- uUGGcGGACGAugaggagcagggagAGGAUGauGACGACAg -3'
miRNA:   3'- gACC-CCUGCU--------------UCUUGCgcCUGCUGUg -5'
1658 3' -55.4 NC_001347.2 + 12139 0.67 0.954268
Target:  5'- uCUGaGGACGAGG-ACuCGGACGAUgACg -3'
miRNA:   3'- -GACcCCUGCUUCuUGcGCCUGCUG-UG- -5'
1658 3' -55.4 NC_001347.2 + 88239 0.67 0.944944
Target:  5'- -aGGGGuCGcugccgccggugaaGAGAGCGCGG-CGuACGCu -3'
miRNA:   3'- gaCCCCuGC--------------UUCUUGCGCCuGC-UGUG- -5'
1658 3' -55.4 NC_001347.2 + 107436 0.67 0.950355
Target:  5'- -cGGcGGACGAGGGAC-UGGAgGuGCGCg -3'
miRNA:   3'- gaCC-CCUGCUUCUUGcGCCUgC-UGUG- -5'
1658 3' -55.4 NC_001347.2 + 36914 0.66 0.973401
Target:  5'- uUGGGcGCGAcgcGGACGCa-GCGACACg -3'
miRNA:   3'- gACCCcUGCUu--CUUGCGccUGCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 173654 0.66 0.973401
Target:  5'- uCUGGGa--GGAGGugGCGGcggugGCGGCAa -3'
miRNA:   3'- -GACCCcugCUUCUugCGCC-----UGCUGUg -5'
1658 3' -55.4 NC_001347.2 + 144216 0.66 0.96782
Target:  5'- -cGGGGA----GGACGUGGAgGACAUc -3'
miRNA:   3'- gaCCCCUgcuuCUUGCGCCUgCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 98154 0.66 0.970706
Target:  5'- --aGGGACGGAGGAaGauGAgGACACa -3'
miRNA:   3'- gacCCCUGCUUCUUgCgcCUgCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 43678 0.66 0.975912
Target:  5'- -aGGGGGC-AGGAACacccuuGCGGAuUGACAUu -3'
miRNA:   3'- gaCCCCUGcUUCUUG------CGCCU-GCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 130635 0.66 0.964739
Target:  5'- gCUGGaagaGGACGAAGAcaGUG-ACGACGCu -3'
miRNA:   3'- -GACC----CCUGCUUCUugCGCcUGCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 63062 0.66 0.964739
Target:  5'- aUGGGuGGCGGAGGACugccgGCGGGugugggcuCGGCAa -3'
miRNA:   3'- gACCC-CUGCUUCUUG-----CGCCU--------GCUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.