Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1658 | 3' | -55.4 | NC_001347.2 | + | 2362 | 0.66 | 0.973401 |
|
Target: 5'- gCUGGGcgcgcuGGCGcuGGGACGCGaGuCGGCGCc -3' miRNA: 3'- -GACCC------CUGCu-UCUUGCGC-CuGCUGUG- -5' |
|||||||
| 1658 | 3' | -55.4 | NC_001347.2 | + | 90716 | 0.66 | 0.973401 |
|
Target: 5'- -aGGGacGACGAAGAcgaACGaGuGACGGCGCc -3' miRNA: 3'- gaCCC--CUGCUUCU---UGCgC-CUGCUGUG- -5' |
|||||||
| 1658 | 3' | -55.4 | NC_001347.2 | + | 36914 | 0.66 | 0.973401 |
|
Target: 5'- uUGGGcGCGAcgcGGACGCa-GCGACACg -3' miRNA: 3'- gACCCcUGCUu--CUUGCGccUGCUGUG- -5' |
|||||||
| 1658 | 3' | -55.4 | NC_001347.2 | + | 201509 | 0.66 | 0.975912 |
|
Target: 5'- uUGGugcgcGACGAAGGACG-GGAUG-CACa -3' miRNA: 3'- gACCc----CUGCUUCUUGCgCCUGCuGUG- -5' |
|||||||
| 1658 | 3' | -55.4 | NC_001347.2 | + | 40031 | 0.66 | 0.975912 |
|
Target: 5'- -cGGGGAaaaGAGGAAguucccgGgGGACGGCAg -3' miRNA: 3'- gaCCCCUg--CUUCUUg------CgCCUGCUGUg -5' |
|||||||
| 1658 | 3' | -55.4 | NC_001347.2 | + | 84434 | 0.66 | 0.975912 |
|
Target: 5'- -gGGGGACcGGGGGCGgGGACa---- -3' miRNA: 3'- gaCCCCUGcUUCUUGCgCCUGcugug -5' |
|||||||
| 1658 | 3' | -55.4 | NC_001347.2 | + | 184908 | 0.66 | 0.975912 |
|
Target: 5'- gCUGGu--UGAAGAGCGCGcacacgcGCGACACa -3' miRNA: 3'- -GACCccuGCUUCUUGCGCc------UGCUGUG- -5' |
|||||||
| 1658 | 3' | -55.4 | NC_001347.2 | + | 43678 | 0.66 | 0.975912 |
|
Target: 5'- -aGGGGGC-AGGAACacccuuGCGGAuUGACAUu -3' miRNA: 3'- gaCCCCUGcUUCUUG------CGCCU-GCUGUG- -5' |
|||||||
| 1658 | 3' | -55.4 | NC_001347.2 | + | 151256 | 0.66 | 0.975912 |
|
Target: 5'- -aGGGGGCucGAAcGAACgGCGGGuggaGGCGCg -3' miRNA: 3'- gaCCCCUG--CUU-CUUG-CGCCUg---CUGUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home