miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1658 3' -55.4 NC_001347.2 + 228023 0.69 0.905167
Target:  5'- gUGGGGACGGAuucuuGAggcuacaaagauACGCGGAgacguCGugGCg -3'
miRNA:   3'- gACCCCUGCUU-----CU------------UGCGCCU-----GCugUG- -5'
1658 3' -55.4 NC_001347.2 + 201509 0.66 0.975912
Target:  5'- uUGGugcgcGACGAAGGACG-GGAUG-CACa -3'
miRNA:   3'- gACCc----CUGCUUCUUGCgCCUGCuGUG- -5'
1658 3' -55.4 NC_001347.2 + 192047 0.71 0.801064
Target:  5'- -cGGcGACGAcGGugGCGGcgACGACACg -3'
miRNA:   3'- gaCCcCUGCUuCUugCGCC--UGCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 184908 0.66 0.975912
Target:  5'- gCUGGu--UGAAGAGCGCGcacacgcGCGACACa -3'
miRNA:   3'- -GACCccuGCUUCUUGCGCc------UGCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 182477 0.75 0.590196
Target:  5'- gCUGaGGacgacGACGAAG-ACGCGGACGACGa -3'
miRNA:   3'- -GAC-CC-----CUGCUUCuUGCGCCUGCUGUg -5'
1658 3' -55.4 NC_001347.2 + 177647 0.75 0.58035
Target:  5'- -cGGGGA-GGAGAGCGUaacGGAgGACACa -3'
miRNA:   3'- gaCCCCUgCUUCUUGCG---CCUgCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 173654 0.66 0.973401
Target:  5'- uCUGGGa--GGAGGugGCGGcggugGCGGCAa -3'
miRNA:   3'- -GACCCcugCUUCUugCGCC-----UGCUGUg -5'
1658 3' -55.4 NC_001347.2 + 164904 0.69 0.892679
Target:  5'- -gGGGGAgGAGGAG-GCGGugGcCAg -3'
miRNA:   3'- gaCCCCUgCUUCUUgCGCCugCuGUg -5'
1658 3' -55.4 NC_001347.2 + 157968 0.69 0.885443
Target:  5'- aCUGGGucugcacGACGAGacGCGCGGAgGAgGCu -3'
miRNA:   3'- -GACCC-------CUGCUUcuUGCGCCUgCUgUG- -5'
1658 3' -55.4 NC_001347.2 + 151256 0.66 0.975912
Target:  5'- -aGGGGGCucGAAcGAACgGCGGGuggaGGCGCg -3'
miRNA:   3'- gaCCCCUG--CUU-CUUG-CGCCUg---CUGUG- -5'
1658 3' -55.4 NC_001347.2 + 144216 0.66 0.96782
Target:  5'- -cGGGGA----GGACGUGGAgGACAUc -3'
miRNA:   3'- gaCCCCUgcuuCUUGCGCCUgCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 140673 0.68 0.916775
Target:  5'- -gGGGGaAUGAuGGGGCGCGG-CGGuCGCa -3'
miRNA:   3'- gaCCCC-UGCU-UCUUGCGCCuGCU-GUG- -5'
1658 3' -55.4 NC_001347.2 + 140575 0.73 0.72784
Target:  5'- -cGGGcggcggugcuGGCGggGGugGUGGACGAgACg -3'
miRNA:   3'- gaCCC----------CUGCuuCUugCGCCUGCUgUG- -5'
1658 3' -55.4 NC_001347.2 + 135767 0.68 0.916775
Target:  5'- -gGGGGAgggGAAGGGCGCGGACc---- -3'
miRNA:   3'- gaCCCCUg--CUUCUUGCGCCUGcugug -5'
1658 3' -55.4 NC_001347.2 + 135070 0.71 0.792329
Target:  5'- gUGGGGACGGugauuguggaGGGGCGUacuGACGACAa -3'
miRNA:   3'- gACCCCUGCU----------UCUUGCGc--CUGCUGUg -5'
1658 3' -55.4 NC_001347.2 + 130635 0.66 0.964739
Target:  5'- gCUGGaagaGGACGAAGAcaGUG-ACGACGCu -3'
miRNA:   3'- -GACC----CCUGCUUCUugCGCcUGCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 117980 1.1 0.004625
Target:  5'- cCUGGGGACGAAGAACGCGGACGACACg -3'
miRNA:   3'- -GACCCCUGCUUCUUGCGCCUGCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 113162 0.76 0.540413
Target:  5'- -cGGGGACGAAGAgggaACGCGcgccccagccgccGGCGugGCg -3'
miRNA:   3'- gaCCCCUGCUUCU----UGCGC-------------CUGCugUG- -5'
1658 3' -55.4 NC_001347.2 + 112783 0.74 0.629798
Target:  5'- -cGGGGGCGccguAGGACGCGGGauaaGACGg -3'
miRNA:   3'- gaCCCCUGCu---UCUUGCGCCUg---CUGUg -5'
1658 3' -55.4 NC_001347.2 + 109361 0.66 0.964739
Target:  5'- cCUGGGaccggcacGACGAGGGugcCGCccaGGGCGACGa -3'
miRNA:   3'- -GACCC--------CUGCUUCUu--GCG---CCUGCUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.