miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1658 3' -55.4 NC_001347.2 + 107436 0.67 0.950355
Target:  5'- -cGGcGGACGAGGGAC-UGGAgGuGCGCg -3'
miRNA:   3'- gaCC-CCUGCUUCUUGcGCCUgC-UGUG- -5'
1658 3' -55.4 NC_001347.2 + 98154 0.66 0.970706
Target:  5'- --aGGGACGGAGGAaGauGAgGACACa -3'
miRNA:   3'- gacCCCUGCUUCUUgCgcCUgCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 95147 0.72 0.737353
Target:  5'- uUGGGGGCGGAGGgaacaggagaaGgGCagGGACGACAg -3'
miRNA:   3'- gACCCCUGCUUCU-----------UgCG--CCUGCUGUg -5'
1658 3' -55.4 NC_001347.2 + 90716 0.66 0.973401
Target:  5'- -aGGGacGACGAAGAcgaACGaGuGACGGCGCc -3'
miRNA:   3'- gaCCC--CUGCUUCU---UGCgC-CUGCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 88360 0.72 0.736405
Target:  5'- gCUGGcGGCGcugccgcGAGAcgACGUGGACGGCACu -3'
miRNA:   3'- -GACCcCUGC-------UUCU--UGCGCCUGCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 88239 0.67 0.944944
Target:  5'- -aGGGGuCGcugccgccggugaaGAGAGCGCGG-CGuACGCu -3'
miRNA:   3'- gaCCCCuGC--------------UUCUUGCGCCuGC-UGUG- -5'
1658 3' -55.4 NC_001347.2 + 84434 0.66 0.975912
Target:  5'- -gGGGGACcGGGGGCGgGGACa---- -3'
miRNA:   3'- gaCCCCUGcUUCUUGCgCCUGcugug -5'
1658 3' -55.4 NC_001347.2 + 80349 0.66 0.973401
Target:  5'- -cGGuGGugGAAGcgGugGaGGACGACAa -3'
miRNA:   3'- gaCC-CCugCUUC--UugCgCCUGCUGUg -5'
1658 3' -55.4 NC_001347.2 + 73708 0.69 0.905167
Target:  5'- -aGGGGcCGggGucCGCGGGCaccgccgccggaGGCGCg -3'
miRNA:   3'- gaCCCCuGCuuCuuGCGCCUG------------CUGUG- -5'
1658 3' -55.4 NC_001347.2 + 67775 0.72 0.765341
Target:  5'- -aGGGGA-GGAGAgccuacagACG-GGACGACACa -3'
miRNA:   3'- gaCCCCUgCUUCU--------UGCgCCUGCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 67007 0.69 0.890731
Target:  5'- gCUGGGGggccaacgccggcuGCGGAGAcaGCuGCGGcgguccucGCGACGCu -3'
miRNA:   3'- -GACCCC--------------UGCUUCU--UG-CGCC--------UGCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 63062 0.66 0.964739
Target:  5'- aUGGGuGGCGGAGGACugccgGCGGGugugggcuCGGCAa -3'
miRNA:   3'- gACCC-CUGCUUCUUG-----CGCCU--------GCUGUg -5'
1658 3' -55.4 NC_001347.2 + 52058 0.67 0.957967
Target:  5'- aCU-GGGACGAGGAGgaggaggcgucCGCGGcccGCGAgCGCa -3'
miRNA:   3'- -GAcCCCUGCUUCUU-----------GCGCC---UGCU-GUG- -5'
1658 3' -55.4 NC_001347.2 + 48499 0.68 0.910501
Target:  5'- -cGGGcacagacGACGAAGAggACGaGGACGACAa -3'
miRNA:   3'- gaCCC-------CUGCUUCU--UGCgCCUGCUGUg -5'
1658 3' -55.4 NC_001347.2 + 43678 0.66 0.975912
Target:  5'- -aGGGGGC-AGGAACacccuuGCGGAuUGACAUu -3'
miRNA:   3'- gaCCCCUGcUUCUUG------CGCCU-GCUGUG- -5'
1658 3' -55.4 NC_001347.2 + 40729 0.75 0.60007
Target:  5'- uUGGGGACGggGAcaguuugcgGCGCGGACc---- -3'
miRNA:   3'- gACCCCUGCuuCU---------UGCGCCUGcugug -5'
1658 3' -55.4 NC_001347.2 + 40672 0.7 0.850197
Target:  5'- -cGGGGACGggGGuuGCGCugGGGcCGGgGCu -3'
miRNA:   3'- gaCCCCUGCuuCU--UGCG--CCU-GCUgUG- -5'
1658 3' -55.4 NC_001347.2 + 40098 0.71 0.818096
Target:  5'- -cGGGGGCGAGGGACGaCGGcccugGgGAcCGCg -3'
miRNA:   3'- gaCCCCUGCUUCUUGC-GCC-----UgCU-GUG- -5'
1658 3' -55.4 NC_001347.2 + 40031 0.66 0.975912
Target:  5'- -cGGGGAaaaGAGGAAguucccgGgGGACGGCAg -3'
miRNA:   3'- gaCCCCUg--CUUCUUg------CgCCUGCUGUg -5'
1658 3' -55.4 NC_001347.2 + 39513 0.81 0.299914
Target:  5'- --aGGGGCGggGGGCGCGG-CGACAUg -3'
miRNA:   3'- gacCCCUGCuuCUUGCGCCuGCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.