Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 1658 | 3' | -55.4 | NC_001347.2 | + | 36914 | 0.66 | 0.973401 |
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Target: 5'- uUGGGcGCGAcgcGGACGCa-GCGACACg -3' miRNA: 3'- gACCCcUGCUu--CUUGCGccUGCUGUG- -5' |
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| 1658 | 3' | -55.4 | NC_001347.2 | + | 33762 | 0.67 | 0.957967 |
|
Target: 5'- -cGGGGcCGuuuGGAACGCGuuucgcuugauaGAaCGACACg -3' miRNA: 3'- gaCCCCuGCu--UCUUGCGC------------CU-GCUGUG- -5' |
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| 1658 | 3' | -55.4 | NC_001347.2 | + | 30954 | 0.71 | 0.801064 |
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Target: 5'- cCUGGGGuaACGAgcGGAGCGCgacccauuucaaGGuCGGCGCa -3' miRNA: 3'- -GACCCC--UGCU--UCUUGCG------------CCuGCUGUG- -5' |
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| 1658 | 3' | -55.4 | NC_001347.2 | + | 17221 | 0.67 | 0.953117 |
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Target: 5'- uUGGcGGACGAugaggagcagggagAGGAUGauGACGACAg -3' miRNA: 3'- gACC-CCUGCU--------------UCUUGCgcCUGCUGUg -5' |
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| 1658 | 3' | -55.4 | NC_001347.2 | + | 12139 | 0.67 | 0.954268 |
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Target: 5'- uCUGaGGACGAGG-ACuCGGACGAUgACg -3' miRNA: 3'- -GACcCCUGCUUCuUGcGCCUGCUG-UG- -5' |
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| 1658 | 3' | -55.4 | NC_001347.2 | + | 8193 | 0.68 | 0.932016 |
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Target: 5'- -cGGGGugGGacgAGAGC-CGGuaggacaGCGGCGCa -3' miRNA: 3'- gaCCCCugCU---UCUUGcGCC-------UGCUGUG- -5' |
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| 1658 | 3' | -55.4 | NC_001347.2 | + | 2362 | 0.66 | 0.973401 |
|
Target: 5'- gCUGGGcgcgcuGGCGcuGGGACGCGaGuCGGCGCc -3' miRNA: 3'- -GACCC------CUGCu-UCUUGCGC-CuGCUGUG- -5' |
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| 1658 | 3' | -55.4 | NC_001347.2 | + | 2113 | 0.72 | 0.746779 |
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Target: 5'- -cGGGGGCGc-GAuuugcgugccuaACGCGGACGcGCACg -3' miRNA: 3'- gaCCCCUGCuuCU------------UGCGCCUGC-UGUG- -5' |
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| 1658 | 3' | -55.4 | NC_001347.2 | + | 1972 | 0.76 | 0.560771 |
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Target: 5'- -cGGGGACGgcG-GCGgGGACGACGu -3' miRNA: 3'- gaCCCCUGCuuCuUGCgCCUGCUGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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