miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1658 5' -61.5 NC_001347.2 + 38004 0.66 0.763229
Target:  5'- cAGCAGcCG-CCGCgcggccucGGCGGCGGgcgCCg- -3'
miRNA:   3'- aUCGUC-GCaGGCG--------CCGCUGCCa--GGaa -5'
1658 5' -61.5 NC_001347.2 + 2309 0.66 0.763229
Target:  5'- gGGCAcGUGUacCCGCuGGCGGCGGagCUg -3'
miRNA:   3'- aUCGU-CGCA--GGCG-CCGCUGCCagGAa -5'
1658 5' -61.5 NC_001347.2 + 156490 0.66 0.754143
Target:  5'- aAGCAGUcacaGCGGCaGCGGUCCg- -3'
miRNA:   3'- aUCGUCGcaggCGCCGcUGCCAGGaa -5'
1658 5' -61.5 NC_001347.2 + 67023 0.66 0.744959
Target:  5'- cGGCuGCGgagacaGCuGCGGCGGUCCUc -3'
miRNA:   3'- aUCGuCGCagg---CGcCGCUGCCAGGAa -5'
1658 5' -61.5 NC_001347.2 + 229696 0.66 0.735686
Target:  5'- gGGguGUGUCgGCGGUGugcGCGG-CCUc -3'
miRNA:   3'- aUCguCGCAGgCGCCGC---UGCCaGGAa -5'
1658 5' -61.5 NC_001347.2 + 217 0.66 0.735686
Target:  5'- gGGguGUGUCgGCGGUGugcGCGG-CCUc -3'
miRNA:   3'- aUCguCGCAGgCGCCGC---UGCCaGGAa -5'
1658 5' -61.5 NC_001347.2 + 161581 0.66 0.726332
Target:  5'- -cGCGGCG-CCGcCGGCuACGcGUCCg- -3'
miRNA:   3'- auCGUCGCaGGC-GCCGcUGC-CAGGaa -5'
1658 5' -61.5 NC_001347.2 + 47132 0.66 0.726332
Target:  5'- cGGCGGCGgcaauggCCGCGGCaGCGGg---- -3'
miRNA:   3'- aUCGUCGCa------GGCGCCGcUGCCaggaa -5'
1658 5' -61.5 NC_001347.2 + 170766 0.66 0.72351
Target:  5'- gGGCGGCGUguuuuugcgcaucgCCGUGGCGuugACGG-CCg- -3'
miRNA:   3'- aUCGUCGCA--------------GGCGCCGC---UGCCaGGaa -5'
1658 5' -61.5 NC_001347.2 + 139324 0.66 0.716903
Target:  5'- cUGGCGGCGUUgugCGCGGCGGUGGgCUg- -3'
miRNA:   3'- -AUCGUCGCAG---GCGCCGCUGCCaGGaa -5'
1658 5' -61.5 NC_001347.2 + 142568 0.66 0.716903
Target:  5'- cUGGCGGCGUCgGCgggagcagcgggGGCGGCGGg---- -3'
miRNA:   3'- -AUCGUCGCAGgCG------------CCGCUGCCaggaa -5'
1658 5' -61.5 NC_001347.2 + 155133 0.66 0.716903
Target:  5'- aGGCGGcCG-CCGCGGCGGCcagcgcuucGUCCa- -3'
miRNA:   3'- aUCGUC-GCaGGCGCCGCUGc--------CAGGaa -5'
1658 5' -61.5 NC_001347.2 + 156677 0.66 0.716903
Target:  5'- aUGGCGGCGggUCGUGGCGGCuGuGUCgUUg -3'
miRNA:   3'- -AUCGUCGCa-GGCGCCGCUG-C-CAGgAA- -5'
1658 5' -61.5 NC_001347.2 + 2213 0.66 0.707409
Target:  5'- aUGGCGG-GUCCgGCGGCGuCGGggaCCg- -3'
miRNA:   3'- -AUCGUCgCAGG-CGCCGCuGCCa--GGaa -5'
1658 5' -61.5 NC_001347.2 + 191992 0.66 0.707409
Target:  5'- cGGCGGCGaCgGaCGGCGGCGGUa--- -3'
miRNA:   3'- aUCGUCGCaGgC-GCCGCUGCCAggaa -5'
1658 5' -61.5 NC_001347.2 + 182292 0.67 0.677645
Target:  5'- -uGCGGCGUcguugCCGgGGCGGCugcuccaGGUCCg- -3'
miRNA:   3'- auCGUCGCA-----GGCgCCGCUG-------CCAGGaa -5'
1658 5' -61.5 NC_001347.2 + 88596 0.67 0.668933
Target:  5'- gAGCcugGGCGaCCugaGCGGCGGCGG-CCUg -3'
miRNA:   3'- aUCG---UCGCaGG---CGCCGCUGCCaGGAa -5'
1658 5' -61.5 NC_001347.2 + 148601 0.67 0.659228
Target:  5'- cGGCGGCGUgaCCgGCGGUG-CGGUCg-- -3'
miRNA:   3'- aUCGUCGCA--GG-CGCCGCuGCCAGgaa -5'
1658 5' -61.5 NC_001347.2 + 39032 0.68 0.639765
Target:  5'- cAGUAcgauccacGCGUcCCGCGGCGACaguugacgcaGGUCCg- -3'
miRNA:   3'- aUCGU--------CGCA-GGCGCCGCUG----------CCAGGaa -5'
1658 5' -61.5 NC_001347.2 + 153240 0.68 0.630021
Target:  5'- gGGCGcGCGUCgGcCGGCGACGGcgguucgCCg- -3'
miRNA:   3'- aUCGU-CGCAGgC-GCCGCUGCCa------GGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.