miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1658 5' -61.5 NC_001347.2 + 118014 1.03 0.003339
Target:  5'- gUAGCAGCGUCCGCGGCGACGGUCCUUc -3'
miRNA:   3'- -AUCGUCGCAGGCGCCGCUGCCAGGAA- -5'
1658 5' -61.5 NC_001347.2 + 159816 0.76 0.243353
Target:  5'- cAGCAGUGcUCCaGCGGCGuuuCGGUCCa- -3'
miRNA:   3'- aUCGUCGC-AGG-CGCCGCu--GCCAGGaa -5'
1658 5' -61.5 NC_001347.2 + 198084 0.73 0.339583
Target:  5'- -cGCGGCgGUCgCGaCGGUGACGGUCCc- -3'
miRNA:   3'- auCGUCG-CAG-GC-GCCGCUGCCAGGaa -5'
1658 5' -61.5 NC_001347.2 + 75409 0.73 0.346897
Target:  5'- gAGCGGCGgCCGUGGCGGCGG-Ca-- -3'
miRNA:   3'- aUCGUCGCaGGCGCCGCUGCCaGgaa -5'
1658 5' -61.5 NC_001347.2 + 93019 0.73 0.346897
Target:  5'- -cGCAgGCGUCCGCGGCGAucaCGGacgaUCCa- -3'
miRNA:   3'- auCGU-CGCAGGCGCCGCU---GCC----AGGaa -5'
1658 5' -61.5 NC_001347.2 + 26132 0.72 0.374925
Target:  5'- aAGCcGCGUCCGCGGaaaCGACGGacgcuacuuuccgaUCCUUg -3'
miRNA:   3'- aUCGuCGCAGGCGCC---GCUGCC--------------AGGAA- -5'
1658 5' -61.5 NC_001347.2 + 142440 0.72 0.393104
Target:  5'- -cGCGGCGUCCGgcgucgggGGUGGCGGUCUUc -3'
miRNA:   3'- auCGUCGCAGGCg-------CCGCUGCCAGGAa -5'
1658 5' -61.5 NC_001347.2 + 76620 0.72 0.401185
Target:  5'- aGGCGGCGgcugcggCCGCGGCGgaggccgaaGCGG-CCUUg -3'
miRNA:   3'- aUCGUCGCa------GGCGCCGC---------UGCCaGGAA- -5'
1658 5' -61.5 NC_001347.2 + 173729 0.72 0.409371
Target:  5'- gAGCAGCGgUgGCGGCGGCGGUg--- -3'
miRNA:   3'- aUCGUCGCaGgCGCCGCUGCCAggaa -5'
1658 5' -61.5 NC_001347.2 + 62532 0.71 0.426049
Target:  5'- -cGCugAGCGUUgGCGGCGAUGGUCa-- -3'
miRNA:   3'- auCG--UCGCAGgCGCCGCUGCCAGgaa -5'
1658 5' -61.5 NC_001347.2 + 124944 0.71 0.469444
Target:  5'- aGGCAGCGUCUcuuGCGGCGcCGacUCCUUg -3'
miRNA:   3'- aUCGUCGCAGG---CGCCGCuGCc-AGGAA- -5'
1658 5' -61.5 NC_001347.2 + 2175 0.7 0.524316
Target:  5'- cAGCAGCGgcgCCGaCGGUGAUGGUg--- -3'
miRNA:   3'- aUCGUCGCa--GGC-GCCGCUGCCAggaa -5'
1658 5' -61.5 NC_001347.2 + 117305 0.69 0.552666
Target:  5'- gGGCGagucgcgauacGCGUaauaguuguuacCCGCGGCGACGGggCCUUc -3'
miRNA:   3'- aUCGU-----------CGCA------------GGCGCCGCUGCCa-GGAA- -5'
1658 5' -61.5 NC_001347.2 + 173540 0.69 0.562221
Target:  5'- gUGGCGGCGgCgGUGGUGGCGGcagCCUc -3'
miRNA:   3'- -AUCGUCGCaGgCGCCGCUGCCa--GGAa -5'
1658 5' -61.5 NC_001347.2 + 101164 0.69 0.57182
Target:  5'- cAGCGGCuuggCCGCGGCGGCGcacgCCa- -3'
miRNA:   3'- aUCGUCGca--GGCGCCGCUGCca--GGaa -5'
1658 5' -61.5 NC_001347.2 + 150563 0.69 0.581458
Target:  5'- gUAGCAGCGUCgGCGuuuucaGCGuCGGcUCCg- -3'
miRNA:   3'- -AUCGUCGCAGgCGC------CGCuGCC-AGGaa -5'
1658 5' -61.5 NC_001347.2 + 95470 0.69 0.581458
Target:  5'- gGGCGcGCGUCaCGCGGCGcCGGUg--- -3'
miRNA:   3'- aUCGU-CGCAG-GCGCCGCuGCCAggaa -5'
1658 5' -61.5 NC_001347.2 + 228918 0.68 0.600827
Target:  5'- aAGCAGCGuagUCUGCGGCGuCGaGcUCCa- -3'
miRNA:   3'- aUCGUCGC---AGGCGCCGCuGC-C-AGGaa -5'
1658 5' -61.5 NC_001347.2 + 192058 0.68 0.610546
Target:  5'- gUGGCGGCGacgaCaCGGCGACGGUCa-- -3'
miRNA:   3'- -AUCGUCGCag--GcGCCGCUGCCAGgaa -5'
1658 5' -61.5 NC_001347.2 + 210474 0.68 0.630021
Target:  5'- cGGgAGCGaUCCcgaccaaaGCGGCGGuCGGUCCa- -3'
miRNA:   3'- aUCgUCGC-AGG--------CGCCGCU-GCCAGGaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.