miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1658 5' -61.5 NC_001347.2 + 217 0.66 0.735686
Target:  5'- gGGguGUGUCgGCGGUGugcGCGG-CCUc -3'
miRNA:   3'- aUCguCGCAGgCGCCGC---UGCCaGGAa -5'
1658 5' -61.5 NC_001347.2 + 2175 0.7 0.524316
Target:  5'- cAGCAGCGgcgCCGaCGGUGAUGGUg--- -3'
miRNA:   3'- aUCGUCGCa--GGC-GCCGCUGCCAggaa -5'
1658 5' -61.5 NC_001347.2 + 2213 0.66 0.707409
Target:  5'- aUGGCGG-GUCCgGCGGCGuCGGggaCCg- -3'
miRNA:   3'- -AUCGUCgCAGG-CGCCGCuGCCa--GGaa -5'
1658 5' -61.5 NC_001347.2 + 2309 0.66 0.763229
Target:  5'- gGGCAcGUGUacCCGCuGGCGGCGGagCUg -3'
miRNA:   3'- aUCGU-CGCA--GGCG-CCGCUGCCagGAa -5'
1658 5' -61.5 NC_001347.2 + 26132 0.72 0.374925
Target:  5'- aAGCcGCGUCCGCGGaaaCGACGGacgcuacuuuccgaUCCUUg -3'
miRNA:   3'- aUCGuCGCAGGCGCC---GCUGCC--------------AGGAA- -5'
1658 5' -61.5 NC_001347.2 + 38004 0.66 0.763229
Target:  5'- cAGCAGcCG-CCGCgcggccucGGCGGCGGgcgCCg- -3'
miRNA:   3'- aUCGUC-GCaGGCG--------CCGCUGCCa--GGaa -5'
1658 5' -61.5 NC_001347.2 + 39032 0.68 0.639765
Target:  5'- cAGUAcgauccacGCGUcCCGCGGCGACaguugacgcaGGUCCg- -3'
miRNA:   3'- aUCGU--------CGCA-GGCGCCGCUG----------CCAGGaa -5'
1658 5' -61.5 NC_001347.2 + 47132 0.66 0.726332
Target:  5'- cGGCGGCGgcaauggCCGCGGCaGCGGg---- -3'
miRNA:   3'- aUCGUCGCa------GGCGCCGcUGCCaggaa -5'
1658 5' -61.5 NC_001347.2 + 62532 0.71 0.426049
Target:  5'- -cGCugAGCGUUgGCGGCGAUGGUCa-- -3'
miRNA:   3'- auCG--UCGCAGgCGCCGCUGCCAGgaa -5'
1658 5' -61.5 NC_001347.2 + 67023 0.66 0.744959
Target:  5'- cGGCuGCGgagacaGCuGCGGCGGUCCUc -3'
miRNA:   3'- aUCGuCGCagg---CGcCGCUGCCAGGAa -5'
1658 5' -61.5 NC_001347.2 + 75409 0.73 0.346897
Target:  5'- gAGCGGCGgCCGUGGCGGCGG-Ca-- -3'
miRNA:   3'- aUCGUCGCaGGCGCCGCUGCCaGgaa -5'
1658 5' -61.5 NC_001347.2 + 76620 0.72 0.401185
Target:  5'- aGGCGGCGgcugcggCCGCGGCGgaggccgaaGCGG-CCUUg -3'
miRNA:   3'- aUCGUCGCa------GGCGCCGC---------UGCCaGGAA- -5'
1658 5' -61.5 NC_001347.2 + 88596 0.67 0.668933
Target:  5'- gAGCcugGGCGaCCugaGCGGCGGCGG-CCUg -3'
miRNA:   3'- aUCG---UCGCaGG---CGCCGCUGCCaGGAa -5'
1658 5' -61.5 NC_001347.2 + 93019 0.73 0.346897
Target:  5'- -cGCAgGCGUCCGCGGCGAucaCGGacgaUCCa- -3'
miRNA:   3'- auCGU-CGCAGGCGCCGCU---GCC----AGGaa -5'
1658 5' -61.5 NC_001347.2 + 95470 0.69 0.581458
Target:  5'- gGGCGcGCGUCaCGCGGCGcCGGUg--- -3'
miRNA:   3'- aUCGU-CGCAG-GCGCCGCuGCCAggaa -5'
1658 5' -61.5 NC_001347.2 + 101164 0.69 0.57182
Target:  5'- cAGCGGCuuggCCGCGGCGGCGcacgCCa- -3'
miRNA:   3'- aUCGUCGca--GGCGCCGCUGCca--GGaa -5'
1658 5' -61.5 NC_001347.2 + 117305 0.69 0.552666
Target:  5'- gGGCGagucgcgauacGCGUaauaguuguuacCCGCGGCGACGGggCCUUc -3'
miRNA:   3'- aUCGU-----------CGCA------------GGCGCCGCUGCCa-GGAA- -5'
1658 5' -61.5 NC_001347.2 + 118014 1.03 0.003339
Target:  5'- gUAGCAGCGUCCGCGGCGACGGUCCUUc -3'
miRNA:   3'- -AUCGUCGCAGGCGCCGCUGCCAGGAA- -5'
1658 5' -61.5 NC_001347.2 + 124944 0.71 0.469444
Target:  5'- aGGCAGCGUCUcuuGCGGCGcCGacUCCUUg -3'
miRNA:   3'- aUCGUCGCAGG---CGCCGCuGCc-AGGAA- -5'
1658 5' -61.5 NC_001347.2 + 139324 0.66 0.716903
Target:  5'- cUGGCGGCGUUgugCGCGGCGGUGGgCUg- -3'
miRNA:   3'- -AUCGUCGCAG---GCGCCGCUGCCaGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.