Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1658 | 5' | -61.5 | NC_001347.2 | + | 142440 | 0.72 | 0.393104 |
Target: 5'- -cGCGGCGUCCGgcgucgggGGUGGCGGUCUUc -3' miRNA: 3'- auCGUCGCAGGCg-------CCGCUGCCAGGAa -5' |
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1658 | 5' | -61.5 | NC_001347.2 | + | 142568 | 0.66 | 0.716903 |
Target: 5'- cUGGCGGCGUCgGCgggagcagcgggGGCGGCGGg---- -3' miRNA: 3'- -AUCGUCGCAGgCG------------CCGCUGCCaggaa -5' |
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1658 | 5' | -61.5 | NC_001347.2 | + | 148601 | 0.67 | 0.659228 |
Target: 5'- cGGCGGCGUgaCCgGCGGUG-CGGUCg-- -3' miRNA: 3'- aUCGUCGCA--GG-CGCCGCuGCCAGgaa -5' |
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1658 | 5' | -61.5 | NC_001347.2 | + | 150563 | 0.69 | 0.581458 |
Target: 5'- gUAGCAGCGUCgGCGuuuucaGCGuCGGcUCCg- -3' miRNA: 3'- -AUCGUCGCAGgCGC------CGCuGCC-AGGaa -5' |
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1658 | 5' | -61.5 | NC_001347.2 | + | 153240 | 0.68 | 0.630021 |
Target: 5'- gGGCGcGCGUCgGcCGGCGACGGcgguucgCCg- -3' miRNA: 3'- aUCGU-CGCAGgC-GCCGCUGCCa------GGaa -5' |
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1658 | 5' | -61.5 | NC_001347.2 | + | 155133 | 0.66 | 0.716903 |
Target: 5'- aGGCGGcCG-CCGCGGCGGCcagcgcuucGUCCa- -3' miRNA: 3'- aUCGUC-GCaGGCGCCGCUGc--------CAGGaa -5' |
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1658 | 5' | -61.5 | NC_001347.2 | + | 156490 | 0.66 | 0.754143 |
Target: 5'- aAGCAGUcacaGCGGCaGCGGUCCg- -3' miRNA: 3'- aUCGUCGcaggCGCCGcUGCCAGGaa -5' |
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1658 | 5' | -61.5 | NC_001347.2 | + | 156677 | 0.66 | 0.716903 |
Target: 5'- aUGGCGGCGggUCGUGGCGGCuGuGUCgUUg -3' miRNA: 3'- -AUCGUCGCa-GGCGCCGCUG-C-CAGgAA- -5' |
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1658 | 5' | -61.5 | NC_001347.2 | + | 157254 | 0.68 | 0.630021 |
Target: 5'- -cGCAGCcaccggcgcaGUuuGCGGCGcagacgucgGCGGUCCUc -3' miRNA: 3'- auCGUCG----------CAggCGCCGC---------UGCCAGGAa -5' |
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1658 | 5' | -61.5 | NC_001347.2 | + | 159816 | 0.76 | 0.243353 |
Target: 5'- cAGCAGUGcUCCaGCGGCGuuuCGGUCCa- -3' miRNA: 3'- aUCGUCGC-AGG-CGCCGCu--GCCAGGaa -5' |
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1658 | 5' | -61.5 | NC_001347.2 | + | 161581 | 0.66 | 0.726332 |
Target: 5'- -cGCGGCG-CCGcCGGCuACGcGUCCg- -3' miRNA: 3'- auCGUCGCaGGC-GCCGcUGC-CAGGaa -5' |
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1658 | 5' | -61.5 | NC_001347.2 | + | 170766 | 0.66 | 0.72351 |
Target: 5'- gGGCGGCGUguuuuugcgcaucgCCGUGGCGuugACGG-CCg- -3' miRNA: 3'- aUCGUCGCA--------------GGCGCCGC---UGCCaGGaa -5' |
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1658 | 5' | -61.5 | NC_001347.2 | + | 173540 | 0.69 | 0.562221 |
Target: 5'- gUGGCGGCGgCgGUGGUGGCGGcagCCUc -3' miRNA: 3'- -AUCGUCGCaGgCGCCGCUGCCa--GGAa -5' |
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1658 | 5' | -61.5 | NC_001347.2 | + | 173729 | 0.72 | 0.409371 |
Target: 5'- gAGCAGCGgUgGCGGCGGCGGUg--- -3' miRNA: 3'- aUCGUCGCaGgCGCCGCUGCCAggaa -5' |
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1658 | 5' | -61.5 | NC_001347.2 | + | 182292 | 0.67 | 0.677645 |
Target: 5'- -uGCGGCGUcguugCCGgGGCGGCugcuccaGGUCCg- -3' miRNA: 3'- auCGUCGCA-----GGCgCCGCUG-------CCAGGaa -5' |
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1658 | 5' | -61.5 | NC_001347.2 | + | 191992 | 0.66 | 0.707409 |
Target: 5'- cGGCGGCGaCgGaCGGCGGCGGUa--- -3' miRNA: 3'- aUCGUCGCaGgC-GCCGCUGCCAggaa -5' |
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1658 | 5' | -61.5 | NC_001347.2 | + | 192058 | 0.68 | 0.610546 |
Target: 5'- gUGGCGGCGacgaCaCGGCGACGGUCa-- -3' miRNA: 3'- -AUCGUCGCag--GcGCCGCUGCCAGgaa -5' |
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1658 | 5' | -61.5 | NC_001347.2 | + | 198084 | 0.73 | 0.339583 |
Target: 5'- -cGCGGCgGUCgCGaCGGUGACGGUCCc- -3' miRNA: 3'- auCGUCG-CAG-GC-GCCGCUGCCAGGaa -5' |
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1658 | 5' | -61.5 | NC_001347.2 | + | 210474 | 0.68 | 0.630021 |
Target: 5'- cGGgAGCGaUCCcgaccaaaGCGGCGGuCGGUCCa- -3' miRNA: 3'- aUCgUCGC-AGG--------CGCCGCU-GCCAGGaa -5' |
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1658 | 5' | -61.5 | NC_001347.2 | + | 228918 | 0.68 | 0.600827 |
Target: 5'- aAGCAGCGuagUCUGCGGCGuCGaGcUCCa- -3' miRNA: 3'- aUCGUCGC---AGGCGCCGCuGC-C-AGGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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