miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16581 3' -49.6 NC_004117.1 + 99051 0.66 0.997465
Target:  5'- aAGCGUUGCGuCGUUUCau-ACUGCa- -3'
miRNA:   3'- -UUGCAACGUuGCGAAGcuuUGACGgg -5'
16581 3' -49.6 NC_004117.1 + 156869 0.66 0.99644
Target:  5'- uAUGUUGCGcauaccguACGUgagCGAuGCUGCCg -3'
miRNA:   3'- uUGCAACGU--------UGCGaa-GCUuUGACGGg -5'
16581 3' -49.6 NC_004117.1 + 152026 0.67 0.993463
Target:  5'- uACGUUGauaaggaauugauuGCGCUUCGcgGCaauuUGCCCg -3'
miRNA:   3'- uUGCAACgu------------UGCGAAGCuuUG----ACGGG- -5'
16581 3' -49.6 NC_004117.1 + 122664 0.67 0.993366
Target:  5'- -uUGUUGCGAUcaGCUUCGAuguacgcuacgcAAUcGCCCa -3'
miRNA:   3'- uuGCAACGUUG--CGAAGCU------------UUGaCGGG- -5'
16581 3' -49.6 NC_004117.1 + 152267 0.67 0.991179
Target:  5'- cACG-UGCGggGCGUUUCGGguGAUUGCCg -3'
miRNA:   3'- uUGCaACGU--UGCGAAGCU--UUGACGGg -5'
16581 3' -49.6 NC_004117.1 + 40778 0.68 0.98989
Target:  5'- uGCGUacuaaucgacUGCGACGa--UGAAACUGCCg -3'
miRNA:   3'- uUGCA----------ACGUUGCgaaGCUUUGACGGg -5'
16581 3' -49.6 NC_004117.1 + 19885 0.68 0.986875
Target:  5'- aAGCGUUGCAACGUU-CGug--UGCCg -3'
miRNA:   3'- -UUGCAACGUUGCGAaGCuuugACGGg -5'
16581 3' -49.6 NC_004117.1 + 97972 0.68 0.983211
Target:  5'- gAACGUuuUGaAACGUgcgCGGcuGACUGCCCg -3'
miRNA:   3'- -UUGCA--ACgUUGCGaa-GCU--UUGACGGG- -5'
16581 3' -49.6 NC_004117.1 + 99224 0.68 0.983211
Target:  5'- aAACGacGCAACGCUUCGuucucGAAC-GCCa -3'
miRNA:   3'- -UUGCaaCGUUGCGAAGC-----UUUGaCGGg -5'
16581 3' -49.6 NC_004117.1 + 13464 0.69 0.976334
Target:  5'- -uCGUUGCGACGCaaucaCGu--UUGCCCa -3'
miRNA:   3'- uuGCAACGUUGCGaa---GCuuuGACGGG- -5'
16581 3' -49.6 NC_004117.1 + 104628 0.69 0.971027
Target:  5'- aAGCGUguucccgacccucggGCGACaCUUCGAuuCUGUCCg -3'
miRNA:   3'- -UUGCAa--------------CGUUGcGAAGCUuuGACGGG- -5'
16581 3' -49.6 NC_004117.1 + 134933 0.71 0.943717
Target:  5'- aAACGUUGUGAUGUUUCGcGAUcaUGCCg -3'
miRNA:   3'- -UUGCAACGUUGCGAAGCuUUG--ACGGg -5'
16581 3' -49.6 NC_004117.1 + 123515 0.77 0.718805
Target:  5'- aAACGUUGCGACGUUgUCGugcuGCUGCUUg -3'
miRNA:   3'- -UUGCAACGUUGCGA-AGCuu--UGACGGG- -5'
16581 3' -49.6 NC_004117.1 + 19713 1.12 0.007792
Target:  5'- gAACGUUGCAACGCUUCGAAACUGCCCg -3'
miRNA:   3'- -UUGCAACGUUGCGAAGCUUUGACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.