miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16583 3' -55.9 NC_004117.1 + 13103 0.66 0.918063
Target:  5'- gGUGGCCGCCuaccUGUGGCacgcCAAcaguuUGCAu -3'
miRNA:   3'- gCACCGGCGGuu--GCGCCGa---GUU-----AUGU- -5'
16583 3' -55.9 NC_004117.1 + 105755 0.66 0.908631
Target:  5'- aCGUGGUacgaguuuacauauaCGUaGugGcCGGCUCAAUACGu -3'
miRNA:   3'- -GCACCG---------------GCGgUugC-GCCGAGUUAUGU- -5'
16583 3' -55.9 NC_004117.1 + 32255 0.67 0.879614
Target:  5'- --gGGCCgGCUAACGCGGCauacUCGAaAUAu -3'
miRNA:   3'- gcaCCGG-CGGUUGCGCCG----AGUUaUGU- -5'
16583 3' -55.9 NC_004117.1 + 33519 0.67 0.87168
Target:  5'- uCGUGGCCgcguucgGCCAGCGC--CUCGauGUACAc -3'
miRNA:   3'- -GCACCGG-------CGGUUGCGccGAGU--UAUGU- -5'
16583 3' -55.9 NC_004117.1 + 48596 0.68 0.841505
Target:  5'- uGUGuGCCGCgAcCGCGGCUCc----- -3'
miRNA:   3'- gCAC-CGGCGgUuGCGCCGAGuuaugu -5'
16583 3' -55.9 NC_004117.1 + 77735 0.68 0.824034
Target:  5'- uGUGuGCacuCGCCAACGCGGCauuguccUCGgauuGUGCAa -3'
miRNA:   3'- gCAC-CG---GCGGUUGCGCCG-------AGU----UAUGU- -5'
16583 3' -55.9 NC_004117.1 + 71972 0.69 0.771074
Target:  5'- -uUGGCCGCUAcagaaaACGCaGGCgugauggCAAUGCAc -3'
miRNA:   3'- gcACCGGCGGU------UGCG-CCGa------GUUAUGU- -5'
16583 3' -55.9 NC_004117.1 + 152725 0.72 0.621364
Target:  5'- aGUGGCCGU--AUGCGuGCUCAAUGa- -3'
miRNA:   3'- gCACCGGCGguUGCGC-CGAGUUAUgu -5'
16583 3' -55.9 NC_004117.1 + 117573 0.75 0.42686
Target:  5'- uCGUGGUgGCCAuuaauAUGCGGCUCA--ACAu -3'
miRNA:   3'- -GCACCGgCGGU-----UGCGCCGAGUuaUGU- -5'
16583 3' -55.9 NC_004117.1 + 32031 1.08 0.003227
Target:  5'- gCGUGGCCGCCAACGCGGCUCAAUACAu -3'
miRNA:   3'- -GCACCGGCGGUUGCGCCGAGUUAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.