miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16584 3' -57.3 NC_004117.1 + 102007 0.66 0.881694
Target:  5'- cGCGGgGUGCguagcggGGuGCGCgGACGccGAGUa -3'
miRNA:   3'- cCGCCgCACG-------UCuCGUGgCUGC--UUCG- -5'
16584 3' -57.3 NC_004117.1 + 20338 0.67 0.853204
Target:  5'- cGGUGGaCGUGCc-GGUAUCGugGAAcGUg -3'
miRNA:   3'- -CCGCC-GCACGucUCGUGGCugCUU-CG- -5'
16584 3' -57.3 NC_004117.1 + 41755 0.67 0.845412
Target:  5'- cGCGGCG-GCuacuGCACC-ACGAgcAGCg -3'
miRNA:   3'- cCGCCGCaCGucu-CGUGGcUGCU--UCG- -5'
16584 3' -57.3 NC_004117.1 + 18313 0.67 0.837433
Target:  5'- cGCGGCGuUGUAGuccCGCuCGACGucGGCg -3'
miRNA:   3'- cCGCCGC-ACGUCuc-GUG-GCUGCu-UCG- -5'
16584 3' -57.3 NC_004117.1 + 64337 0.67 0.824295
Target:  5'- aGCGGCGUG-AGAGCuggaguuuuuuguuCCGACu-GGCc -3'
miRNA:   3'- cCGCCGCACgUCUCGu-------------GGCUGcuUCG- -5'
16584 3' -57.3 NC_004117.1 + 1461 0.67 0.8201
Target:  5'- aGGCGGUG-GCGGAggaggagGCGgCGGCGGuGGUa -3'
miRNA:   3'- -CCGCCGCaCGUCU-------CGUgGCUGCU-UCG- -5'
16584 3' -57.3 NC_004117.1 + 18102 0.68 0.786037
Target:  5'- cGCGGCGUcugucCAGAcuGCaacGCCGACGucGAGCg -3'
miRNA:   3'- cCGCCGCAc----GUCU--CG---UGGCUGC--UUCG- -5'
16584 3' -57.3 NC_004117.1 + 141355 0.68 0.786037
Target:  5'- uGGauGC--GCcGAGCACCGAgGGAGCu -3'
miRNA:   3'- -CCgcCGcaCGuCUCGUGGCUgCUUCG- -5'
16584 3' -57.3 NC_004117.1 + 17528 0.69 0.748999
Target:  5'- uGGCGGCGUGCGacucucGCACCGGauucaaacGCa -3'
miRNA:   3'- -CCGCCGCACGUcu----CGUGGCUgcuu----CG- -5'
16584 3' -57.3 NC_004117.1 + 11219 0.69 0.72015
Target:  5'- aGCGGCGaUGa--AGuCACCGACGAuAGCg -3'
miRNA:   3'- cCGCCGC-ACgucUC-GUGGCUGCU-UCG- -5'
16584 3' -57.3 NC_004117.1 + 100072 0.7 0.669727
Target:  5'- cGCGGCGcuauaauuuuuUGCAuaaugcuGGGCACCGGCacucgcauaaauGAAGCg -3'
miRNA:   3'- cCGCCGC-----------ACGU-------CUCGUGGCUG------------CUUCG- -5'
16584 3' -57.3 NC_004117.1 + 113674 0.7 0.650687
Target:  5'- uGGCGGCGaGCguuaAGAGCAaacaUCGAC-AAGCa -3'
miRNA:   3'- -CCGCCGCaCG----UCUCGU----GGCUGcUUCG- -5'
16584 3' -57.3 NC_004117.1 + 95282 0.75 0.386989
Target:  5'- gGGCGGUG-GCGGAgGCAaCGAUGAAGUu -3'
miRNA:   3'- -CCGCCGCaCGUCU-CGUgGCUGCUUCG- -5'
16584 3' -57.3 NC_004117.1 + 34324 1.14 0.001104
Target:  5'- aGGCGGCGUGCAGAGCACCGACGAAGCa -3'
miRNA:   3'- -CCGCCGCACGUCUCGUGGCUGCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.