miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16585 5' -53.4 NC_004117.1 + 113842 0.66 0.973675
Target:  5'- cGCU-CGCCGCCAg-GUC-AUGUCGu -3'
miRNA:   3'- aCGGuGCGGCGGUaaUAGcUACAGCc -5'
16585 5' -53.4 NC_004117.1 + 102517 0.66 0.970891
Target:  5'- cGCCcauauucgacgACGCCGgaCAU--UUGGUGUCGGu -3'
miRNA:   3'- aCGG-----------UGCGGCg-GUAauAGCUACAGCC- -5'
16585 5' -53.4 NC_004117.1 + 134953 0.66 0.969122
Target:  5'- -aUCAUGCCGUCGUacauuaauauauugcUAUUGGUGUCGcGg -3'
miRNA:   3'- acGGUGCGGCGGUA---------------AUAGCUACAGC-C- -5'
16585 5' -53.4 NC_004117.1 + 100696 0.66 0.967902
Target:  5'- -uUCAcCGUCGUCGUcGUCGGUGUCGu -3'
miRNA:   3'- acGGU-GCGGCGGUAaUAGCUACAGCc -5'
16585 5' -53.4 NC_004117.1 + 71446 0.67 0.964701
Target:  5'- gGCCguACGCCaCCAacccAUCGAaagUGUCGGc -3'
miRNA:   3'- aCGG--UGCGGcGGUaa--UAGCU---ACAGCC- -5'
16585 5' -53.4 NC_004117.1 + 97705 0.67 0.945339
Target:  5'- gUGUCuguGUCGUUGUcGUCGGUGUCGGa -3'
miRNA:   3'- -ACGGug-CGGCGGUAaUAGCUACAGCC- -5'
16585 5' -53.4 NC_004117.1 + 77784 0.68 0.930898
Target:  5'- cGCgGCGCgGUCGUUGUCGAcGcUGGc -3'
miRNA:   3'- aCGgUGCGgCGGUAAUAGCUaCaGCC- -5'
16585 5' -53.4 NC_004117.1 + 107827 0.69 0.908256
Target:  5'- gUGCCAucauCGCCGCCuGUUGUugcUGGUGUUGu -3'
miRNA:   3'- -ACGGU----GCGGCGG-UAAUA---GCUACAGCc -5'
16585 5' -53.4 NC_004117.1 + 53904 0.7 0.843725
Target:  5'- gUGUUugGCCGCCAaggUAUUGGUGUa-- -3'
miRNA:   3'- -ACGGugCGGCGGUa--AUAGCUACAgcc -5'
16585 5' -53.4 NC_004117.1 + 144732 0.71 0.798987
Target:  5'- cGuCCuCGCCGCCAUUAUUGuacacaaucaauUGUUGGg -3'
miRNA:   3'- aC-GGuGCGGCGGUAAUAGCu-----------ACAGCC- -5'
16585 5' -53.4 NC_004117.1 + 30943 0.75 0.591626
Target:  5'- aUGCCgACGCCGCCGUacacgAUC-AUGUCGa -3'
miRNA:   3'- -ACGG-UGCGGCGGUAa----UAGcUACAGCc -5'
16585 5' -53.4 NC_004117.1 + 122097 0.76 0.561038
Target:  5'- gUGUCAucguCGUCGUCGUcGUCGGUGUCGGu -3'
miRNA:   3'- -ACGGU----GCGGCGGUAaUAGCUACAGCC- -5'
16585 5' -53.4 NC_004117.1 + 37766 1.11 0.004597
Target:  5'- uUGCCACGCCGCCAUUAUCGAUGUCGGu -3'
miRNA:   3'- -ACGGUGCGGCGGUAAUAGCUACAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.